Gene detail information of Glyur000097s00008344 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30330.1 | 1.00E-42 | Small nuclear ribonucleoprotein family protein |
| NR | XP_003523208.1 | 2.15E-56 | PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] |
| COG | YP_874991.1 | 5.00E-07 | small nuclear ribonucleoprotein [Cenarchaeum symbiosum A] |
| Swissprot | tr|Q9FKB0|LSM5_ARATH | 9.00E-08 | Sm-like protein LSM5 {ECO:0000305} |
| trEMBL | tr|I3SF84|I3SF84_LOTJA | 8.00E-57 | Uncharacterized protein {ECO:0000313|EMBL:AFK38926.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 337923 | 338735 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008344.1 | PF01423.17 | LSM | 39 | 103 | 7.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.676 |
| SRR1783600 | control | 21.306 |
| SRR1783602 | moderate drought stress | 27.286 |
| SRR1811619 | moderate drought stress | 25.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.649 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 61.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.465 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.559 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.776 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.579 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.124 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 50.787 |
| SRR2868004 | Drought Stress (root) | 44.673 |
| SRR2967015 | Control (root) | 38.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.352 |
| SRR9715740 | Leaf | 19.229 |
| SRR9715741 | Leaf | 17.183 |
| SRR9715739 | Root | 4.024 |
| SRR9715742 | Root | 11.366 |
| SRR9715743 | Root | 8.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 59.043 |
| SRR8749028 | MeJA induced 9h | 28.233 |
| SRR8749029 | MeJA induced 9h | 32.527 |
| SRR8749030 | Uninduced | 6.203 |
| SRR8749031 | Uninduced | 5.249 |
| SRR8749032 | Uninduced | 5.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.853 |
| SRR8400027 | Control - Root | 44.674 |