Gene detail

Gene detail information of Glyur000097s00008342

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16130.1	0	arabinose kinase
NR	XP_004498554.1	0	PREDICTED: L-arabinokinase-like [Cicer arietinum]
COG	YP_003323924.1	4.00E-123	GHMP kinase [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|O23461\|ARAK_ARATH	0	L-arabinokinase
trEMBL	tr\|G7I565\|G7I565_MEDTR	0	Arabinose kinase-like protein {ECO:0000313\|EMBL:AES58866.1}

Sequence

Transcript Sequence

>Glyur000097s00008342.1
ATTACAACAAAACATGGGCCATATATCCAACCAAAAAGTCCAAAACAAAGGATATTCCTCATCCCTCAACCTCGACACTCTTAACAAACACTTTTACGTCCAATTTCAAACTCCCCCAAGTCCTAACTATCAAATTGCCATATCCATTGTTGTTTTTAACAACCAGAACCAGTTTTGTACGCAACTCAATTCTCTCTCTCCTCACTCATCATCCCTATCCTCTGTAACAGCATCATTCTCATCATCAATCATCGCTTGTCCCTATTGCCTATTATTAGGATTAGGATTATGATCCTCTCAATATGATACAATAAATATAATAAATGACAATAAATAAATAAACATTCTTCTTCTTCAACAGACACAAACACAAATAAAAGCTCATCATCCTCATCTCTCTCTCCTTCTCTCTCTCATTCACTTTAGATATTAGAGTAATAGGATAGAAGAATAGAATAGAACTTGATTGATTCATTGCAAAAATGAGGATCGAGGAAGAAAGTGATGGAGTCTCCGCTTCCAGAAAGCACCTCGTATTTGCCTATTACGTCACTGGTCATGGTTTTGGCCATGCCACTCGAGTCACTGAGGTGGTGCGGCATTTGATCCATGCGGGGCATGATGTGCATGTGGTCACTGGTGCTCCTGATTTTGTTTTCACATCTGAAATACAGTCTCCTCGCCTATTCATTCGCAAGGTGCTTTTGGACTGTGGAGCTGTTCAGGCAGATGCTTTGACTGTCGATCGCCTTGCCTCTTTGGAGAAGTATTCTGAAACAGCAGTGAAGCCCCGTGCTAAAATCTTGGCAATAGAAACAGAGTGGCTGAACTCTATCAAAGCTGACTTAGTGGTCTCTGATGTTGTCCCAGTTGCATGTCGCGCCGCAGCAGATGCGGGCATTCGCTCTGTCTGTGTGACCAATTTCAGTTGGGACTTCATCTATGCAGAGTATGTCATGGCTGCTGGACTTCATCATCGTTCAATAGTTTGGCAGCATGATAAATCAGTTGTATATACACTAATGCAGATAGCTGAGGACTATTCCCATTGCGAGTTCCTTATTCGCCTCCCGGGATATTGCCCAATGCCTGCTTTTCGTGATGTTATTGATGTTCCTCTGGTGGTGAGGAGGTTGCACAAATCTGCAAAAGAGGTAAGGAAGGAGCTTGAGTTACCCGATGGTGTGAAGCTAGTTATTCTCAACTTTGGTGGGCAGCCATCAGGATGGAAGCTGAAGGAGGATTTCTTACCTTCTGGCTGGTTGTGCCTGGTTTGTGGCGCTTCTGACAATGAGGACCTTCCACCAAACTTTAAAAAACTTGCTAGAGATGCATATACGCCTGACATTATTGCAGCATGCGACTGTATGCTTGGTCATGAAGCCCTGGCATACAAGTGTCCTTTTGTCTTTGTACGTAGAGATTATTTCAATGAAGAACCTTTCTTGAGAAATATGCTTGAGTCTTATCAATGCGGCGTTGAAATGATTAGGAGGGATTTACTAACCGGTCACTGGAGACCTTATCTTGAACGTGCAATAAGTTTGAAACCCTGCTATGAAGCAGGCATTAATGGTGGTGAGGTGGCAGCGCACATCCTGCAGGAGACAGCTTTTGGAAAAAATTATGCATCAGATAAGCTTAGTGGGGCAAGAAGATTACGTGATGCCATAGTTCTTGGGTATCAACTTCAAAGGGCCCCTGGCCGTGATATTGCAATCCCAGAATGGTATGCAGCCGAAGATCAACTTGGCCACTCATCACCTTGTTCCCCTGTGGATAATGGAAGCTTTGAATTCCAGTCATTGGGCGTAGAAGATTTTGACATTCTTCATGGAGATGTTCAAGGTCTACCAGATACTGTGGCATTCTTACAGAGCCTATCTGAACTGGTTGAGAGGCACACGAGGCGGGAGCGCAAGGCTGCAGCTGGTCTCTTCAACTGGGAGGAAGACATTTTTGTAACGAGAGCTCCTGGAAGGTTAGATGTAATGGGTGGTATTGCTGATTATTCTGGAAGCCTTGTCCTGCAGATGCCAATTAGAGAAGCCTGTCATGTTGCTTTGCAAAGAGTCCATCCAAGTAAGCATAGACTGTGGAAACATGCTGAGGCTAGACAGAATGACAAAGGGAGAAATCCAACTGCTGTCTTGCAAATTGTGTCATATGGCTCAGAATTGAGCAATCGTGGTCCAACATTTGACATGGATTTGTCTGATTTTATGGATGAAGGCAAGCCAATTTCATATGAGAAAGCAAACAAATACTTTGCTCAAGATCCATCCCAAAAGTGGGCAGCATATGTTGCTGGGTCAATTTTGGTCTTAATGACTGAATTGGGTGTGCAATTTGAAGATAGCATCAGCATGCTGGTTTCATCTGCAGTCCCAGAAGGGAAAGGTGTATCATCTTCTGCATCTATAGAGGTTGCTAGTATGGCTGCTATTGCAGCTGCCCATGGATTAAATATCAGCTCAAGGGATCTTGCTTTGCTCTGCCAGAAGGTGGAAAATCACATTGTAGGAGCTCCATGTGGTGTCATGGACCAGATGGCTTCATCATGTGGNGAAGCCAACAAACTCCTTGCTATGATTTGCCAGCCTGCAGAGATTGTTGGCCTTGTCGAAATTCCCAGCCATATCCGGGTATGGGGAATTGATTCTGGAATAAGACACAGTGTTGGAGGTGCAGACTATGGATCTGTCAGAATTGGAACCTTTATGGGTATGAAGATGATAAAGTCCAGGGCTTCTGAGGAATTGTCTGAGATGTGTGCTGCTAATGGGTTGAACTATGATGAAGTGGAACAAGATGATATAGAACTACTTAAACAAGAAGCCTCCTTAGATTACTTATGTAATTTGACACCTCACAGATTCGAGGCTCTTTATGCTAAGAAAATTCCAGATTCCACTACTGGTGAGAAATTTTTGGAGGGATATAAAAATCATAATGATCCTGTCACTATCATTGATCAGAAGCGTACTTACAGTGTGAAAGCTCCCACAATACATCCTATCTACGAAAATTTCCGAGTCAAGACCTTCAAAGCACTTCTGACATCGGCAACTTCAAATGATCAACTCACAGCCTTAGGAGAATTGCTATATCAGTGCCATTACAGCTACAGTGCTTGTGGACTAGGCTCTGATGGAACAGATAGGCTTGTTCACTTGGTACAAGAAATACAGCATAGTGCAACATCAAAAGCTGAAGGTGGGACATTATGCGGAGCCAAGATCACTGGTGGGGGTTCCGGTGGAACGGTTTGCGTAATTGGTAGAAACTGTCTCAAGAGCAGTGAACATATTTTTGAGGTTCAGCAGAGGTACAAAAAAGCCACTGGTTATCTGCCCTTTATTTTTGAAGGTTCATCACCGGGTGCCGGAAAGTTTGGTCACCTGAGACTTCGCCGTCGAGCTACCCCCAAAAAGGTTAAAAGCTGTGGGAAAGATCTTGCAGTCTTGGGGGAGAATGACAGCTGATAATCATGGCTTATATTTAAGTTCGTCAGTAATCCTTGCATTATCCTACTCCAGAACCTGTATAGTATGGTAACTTTTAGGACTTTAGTCAATTATTAGCATTTTTAAAACACATTCCTTTATGATCTTTTTTTTTATTGTGATTCCAAAATGGAACTTGCTGGCATGTTGAAAATTGGTGGCCATTAGCAACCTTTGTTCCATTAAAGGGACAAAGATTATGAGGAAAAGAAGCCGCTGATGGGCAAATTATTGGATATTGAATAATTAATGAA

Protein Sequence

>Glyur000097s00008342.1
MRIEEESDGVSASRKHLVFAYYVTGHGFGHATRVTEVVRHLIHAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVKPRAKILAIETEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGLHHRSIVWQHDKSVVYTLMQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSAKEVRKELELPDGVKLVILNFGGQPSGWKLKEDFLPSGWLCLVCGASDNEDLPPNFKKLARDAYTPDIIAACDCMLGHEALAYKCPFVFVRRDYFNEEPFLRNMLESYQCGVEMIRRDLLTGHWRPYLERAISLKPCYEAGINGGEVAAHILQETAFGKNYASDKLSGARRLRDAIVLGYQLQRAPGRDIAIPEWYAAEDQLGHSSPCSPVDNGSFEFQSLGVEDFDILHGDVQGLPDTVAFLQSLSELVERHTRRERKAAAGLFNWEEDIFVTRAPGRLDVMGGIADYSGSLVLQMPIREACHVALQRVHPSKHRLWKHAEARQNDKGRNPTAVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPISYEKANKYFAQDPSQKWAAYVAGSILVLMTELGVQFEDSISMLVSSAVPEGKGVSSSASIEVASMAAIAAAHGLNISSRDLALLCQKVENHIVGAPCGVMDQMASSCGEANKLLAMICQPAEIVGLVEIPSHIRVWGIDSGIRHSVGGADYGSVRIGTFMGMKMIKSRASEELSEMCAANGLNYDEVEQDDIELLKQEASLDYLCNLTPHRFEALYAKKIPDSTTGEKFLEGYKNHNDPVTIIDQKRTYSVKAPTIHPIYENFRVKTFKALLTSATSNDQLTALGELLYQCHYSYSACGLGSDGTDRLVHLVQEIQHSATSKAEGGTLCGAKITGGGSGGTVCVIGRNCLKSSEHIFEVQQRYKKATGYLPFIFEGSSPGAGKFGHLRLRRRATPKKVKSCGKDLAVLGENDS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	321296	335257	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12446	E2.7.1.46	EC:2.7.1.46	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0008152 metabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0005524 ATP binding

GO:0016301 kinase activity

GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008342.1	PF13528.1	Glyco_trans_1_3	21	147	9.90E-12
Glyur000097s00008342.1	PF10509.4	GalKase_gal_bdg	486	530	2.00E-05
Glyur000097s00008342.1	PF00288.21	GHMP_kinases_N	630	695	1.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.559
SRR1783600	control	4.458
SRR1783602	moderate drought stress	9.601
SRR1811619	moderate drought stress	9.549

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.355
DRR006520	Root Summer glycyrrhizin high producing strain	9.480
DRR006521	Root Winter glycyrrhizin high producing strain	6.344
DRR006522	Root Winter glycyrrhizin high producing strain	6.243
DRR006523	Root Summer glycyrrhizin low producing strain	12.717
DRR006524	Root Summer glycyrrhizin low producing strain	12.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.516
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.525

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.276
SRR2868004	Drought Stress (root)	40.262
SRR2967015	Control (root)	55.665

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.838
SRR9715740	Leaf	19.510
SRR9715741	Leaf	26.391
SRR9715739	Root	4.581
SRR9715742	Root	21.922
SRR9715743	Root	18.353

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.458
SRR8749028	MeJA induced 9h	25.815
SRR8749029	MeJA induced 9h	9.477
SRR8749030	Uninduced	20.523
SRR8749031	Uninduced	24.149
SRR8749032	Uninduced	20.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.090
SRR8400027	Control - Root	19.997