Gene detail

Gene detail information of Glyur000097s00008340

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11010.3	1.00E-128	Pre-mRNA cleavage complex II protein family
NR	XP_003525672.1	0	PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9-like isoform X1 [Glycine max]
COG	NP_248315.1	2.00E-11	hypothetical protein MJ_1315 [Methanocaldococcus jannaschii DSM 2661]
Swissprot	tr\|Q8VYP6\|NOL9_ARATH	3.00E-159	Polynucleotide 5'-hydroxyl-kinase NOL9
trEMBL	tr\|I1K1J8\|I1K1J8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G08830.4}

Sequence

Transcript Sequence

>Glyur000097s00008340.1
ATGGGTTCTCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCAGCTGCAGACATTTACATCCCAGAGCAATGGTGGGATGCAGCAGAGTCGATCGCAGCAGCACAGAGCTCAACTATCACAGTGATATGTGGAGCTAAGAATTGTGGGAAGACAACCTTCTCCCGCCACCTCCTCAACCGCCTCCTCCGCACGCATGCCAGGGTGGCTTACCTGGACACCGATGTGGGCCAGCCCGAGTTCACTCCTCCCGCTTTTCTCTCCCTAACCATTCTTCACCAAGTCACTCCAGATTTGACGATTCCGTGCCTGAAAACACCAGAGAGGTGCCTTTACTTTGGTGATGTTTCTTCTAAGAGAAATCCATCAACATACTTAAATTATGTGTTCTCCATATATGATTATTATCAAAAGGAGTATTGCGCCTTTGATGATCAGGGAGAAAATCCTCCTAGGATTGGGTTGCCTCTTATAGTGAATACTCCTGGCTGGGTGAAAGGTGTTGGTTATGACGTACTAGTGGACATGGTAAAATATATTTGTCCCACACATGTAGTTAAGATAAGCATATCCAGTGAGAATAAGAATTTACCTGCTGGAGAATTCTGGTTAGATGGGGAACATCATGGAACAACTAACTTGATTGAGATAAATTCAGCTCGTCAGGACTCTTTAAATAGATCGGTACTTGTTAGGAAGGATACTCGTCTTCTGCGTGATTTACGAATAATGGCTTATTTCAGACAGTGCTTTCCTAGTGATTCAGATATTTCAACGATCAAGGACCTTGCACATTCCTTGGCTTCTCACTGTCCTTATGAAATTCCTATTGCGAGCGTAAAGATTCGACATCTTCATAGCGAGGTCCCAAGCTCTGAAATATTCTACAGTTTGAATGCTAGTATTGTTGGCTTAGCAGTTGACTCTGAAGGGCCTGATAATTTACCTTGGTGTCTTGGTCTTGGGATTGTGAGGGGCATTGACACAGTTAAAAGGGTGCTCTATGTGATTACACCTGTGCCACATAGTTCTCTGAAAAAAGTCAACCTCCTGCTTCAGGGTTATGTCCAAATTCCTACTTGCTTATTACAGGTCCAGGGATGCATATCACCTTATATGTCAGCGAATGTATTGACTACAAGTTAGTTATTTTCAGGAGTTAGCAAAGAGAACCATCATAGTAAAAGGGTAGTAGCCAACTCTTTATAGTTATTATACATTCTTCCTTTCCATAGAAGCAGCACTACACGTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	316348	320749	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008340.1	PF03205.9	MobB	40	84	2.10E-09
Glyur000097s00008340.1	PF06807.9	Clp1	163	361	3.20E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.187
SRR1783600	control	4.344
SRR1783602	moderate drought stress	2.777
SRR1811619	moderate drought stress	2.673

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.241
DRR006520	Root Summer glycyrrhizin high producing strain	6.693
DRR006521	Root Winter glycyrrhizin high producing strain	2.479
DRR006522	Root Winter glycyrrhizin high producing strain	2.679
DRR006523	Root Summer glycyrrhizin low producing strain	4.618
DRR006524	Root Summer glycyrrhizin low producing strain	4.860
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.454
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.401

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.970
SRR2868004	Drought Stress (root)	2.551
SRR2967015	Control (root)	2.702

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.531
SRR9715740	Leaf	2.123
SRR9715741	Leaf	0.814
SRR9715739	Root	2.698
SRR9715742	Root	4.761
SRR9715743	Root	3.122

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.098
SRR8749028	MeJA induced 9h	1.078
SRR8749029	MeJA induced 9h	1.207
SRR8749030	Uninduced	0.131
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.005

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.028
SRR8400027	Control - Root	5.716