Gene detail

Gene detail information of Glyur000097s00008337

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52190.1	2.00E-164	Major facilitator superfamily protein
NR	XP_003588616.1	0	LATD/NIP [Medicago truncatula]
COG	YP_008149431.1	6.00E-23	hypothetical protein SCE1572_14985 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9M817\|PTR6_ARATH	0	Protein NRT1/ PTR FAMILY 1.2
trEMBL	tr\|D2IU94\|D2IU94_MEDTR	0	Peptide/nitrate transporter plant {ECO:0000313\|EMBL:AES58867.1}

Sequence

Transcript Sequence

>Glyur000097s00008337.1
ATTTCTAGTTCTGTTCATAGTTAAACTCCCATTGTACTTTTAATCCAAAAGATAAACTCCCATTGTACAACTCCTGCAAGCTAAGCTATCTCTTGCAGCACAGAGCAAGGAGATGGAGTACGCTGCTGCAAACGAGAAATTGATAGAAAATGGCACCTCTTCTTCTTCCTCTGATTCTGGACCCAGAAAGGGTGGTTTGAGAACCATGCCTTTCATCATAGTGAATGAGTGTTTGGAGAAGGTGGCAAGCTATGGGATAATGCCTAACATGATATTGTACTTGAGGGATGATTATCACATGGCCATTGCTAAGGCCACGAATGTTCTCTACACTTGGTCTGCCATGTCCAACGTCTTGTCCATCTTTGGTGCCTTCCTCTCTGATTCTTACTTGGGTCGCTTCCGTGTTGTCCTTATTGGTTCCCTCTCCAGCCTTCTTGGTTTAACCATTTTGTGGTTAACTGCCATGGTCCCAGAGCTAAAACCTTCCTGTGTATCACTCATCCAACAAGTCTGCAACTCTGCTACAGCACCCCAACTAGCAGTTTTGTTCCTTTCCTTAGGATTAATTTCCATTGGAGCTGGTTGTGTTAGGCCTTGTTCCATAGCCTTTGGAGCAGATCAACTGGCTATTAAAGAAAATTCCAATGATGGGAGGCTCTTGGATAGCTACTTTAATTGGTATTATGCCTCAATTGCAGCCTCAACCCTTCTTGCATTTAGTGTCATTGTTTACATTCAAGAAAACCTCGGATGGAAGATCGGGTTCGGAATACCTGCAGTGCTAATGTTGATATCNGCTTTCAGTTTCATTCTTGGTTCACCATACTATGTCAAAGTGGTGCCAAGTGAGAGCTTGCTCACTAGTTTTGTACAAGTAGTTGTGGTGGCCATAAAGAACAGAAAACTCAGTCTTCCCGATCGCAACTTTAATAAGTATTATCAAGGCCATGATATGGAGCTGATGGTCCCTACAGATAGCCTTAGGTGTTTGAACAAAGCTTGCATAATCAGAAATCCCGAGACAGACTTAAATCCAGATGGATCAATTTCAAATCCGTGGAACCTATGCAAGGTAGGACAGGTGGAGTCACTAAAATCTTTGCTAAGAGTCCTTCCTATGTGGTCCACTGGAATCTTTATGATGGCAACTCAGAGTTCATTTTCCACTCTTCAAGCAAGTACCATGGACCGAACGTTATTTGGCAATTTCAAGTTTCCTGCAGGATCCTTCAATCTTATCATGATAATCACCTTATCAATAGTCATTCCTATATATGACCGCATATTAGTACCTCTACTAGCAAAATACACAGGCCGTCCTAGAGGGTTCAGTTGTAAAGTTCGCATCGGGATAGGATTGCTGTTCGTATGTGTAGCTAAAGCAACATCAGCCATAGTTGAGACCNCGAGACGAAGTGTAGCCATTGGAGAAGGGTTCGAGGACCAACCTAATGCCATAATCAACATGTCAGCTCTATGGCTAGTTCCAGAGTTTGTTTTGCTTGGAATAGCTGAGGCTTTCACCCCAGTTGGGCTGGTTGAGTTTTTCTACTCTTATTTCCCTAAGAGCATGTCTAGTTTTGCAATGGCTCTTTTCACACTTGAGCTAGCTGCTGCTGATGTAGNGGGAAGTGTGGTGGTGAACATAGTGGACAATGTCACCAGTATAGGAGGGAAAGAGAGCTGGTTATCAACTAACATCAACAGGGGCCATCTGAATTACTATTATGCACTACTTGCTTTCTTATGTATGATTAACTACCTCTACTATCTTGTTATTTGTTGGGCATATGGGCCTGATCCGGGCAAAAAACTCGAAGCTTCAGCGGGCAAGGAAGACGAGAAATTTGATTACAGGGAGTTACCTACATCTTAGATTAGTCTTTAATATATAACAGATTATGTAGACACTGAGAAATTTTGTAGTAGTGTACTGCATAGCTGTGTGTTGTTGTGTCTGTAAAACTAATAGGCTGTTGAGAAGAACAAAGAAAAAAAGAAAAAGAGAGAAACGTTTGCATATTTTACTGTTGTATCTATAATACAATAGTATGCTTTATTTATAGAAATTACAATGAATGATAATGAAAAGAAAATAATTACATATTATTTTGATTGAGGTGATCAAGCTAATTACTAGCTAAATTTACTCAAGTAGCCGACTCCATCTAGTGGGATAAGGCTTGTTGTTGAGGTATAGATGCAATTAACTTGAGTTTGTAAACCAAGGTACGAAATCTTGTCGGATGATGTGCCTTGGTAAAGAATTCAGTTGGCTGGTCAGGAGTAGCCACAGAAAGGAGATTAAGAACCCCATGAAGAATGTGTTGATGAATGAAATGACAATCAATCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	308234	312433	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008337.1	PF00854.16	PTR2	97	498	1.90E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.273
SRR1783600	control	58.480
SRR1783602	moderate drought stress	60.973
SRR1811619	moderate drought stress	60.988

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.299
DRR006520	Root Summer glycyrrhizin high producing strain	54.912
DRR006521	Root Winter glycyrrhizin high producing strain	15.914
DRR006522	Root Winter glycyrrhizin high producing strain	15.348
DRR006523	Root Summer glycyrrhizin low producing strain	26.564
DRR006524	Root Summer glycyrrhizin low producing strain	26.599
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.374
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.532
SRR2868004	Drought Stress (root)	17.699
SRR2967015	Control (root)	28.910

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.488
SRR9715740	Leaf	26.691
SRR9715741	Leaf	20.195
SRR9715739	Root	10.631
SRR9715742	Root	48.515
SRR9715743	Root	40.014

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.588
SRR8749028	MeJA induced 9h	12.655
SRR8749029	MeJA induced 9h	7.268
SRR8749030	Uninduced	5.895
SRR8749031	Uninduced	1.193
SRR8749032	Uninduced	1.813

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.051
SRR8400027	Control - Root	22.302