Gene detail

Gene detail information of Glyur000097s00008334

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21080.1	3.00E-122
NR	XP_004498558.1	0	PREDICTED: uncharacterized protein LOC101507189 [Cicer arietinum]
trEMBL	tr\|G7I570\|G7I570_MEDTR	0	Extracellular ligand-gated ion channel protein {ECO:0000313\|EMBL:AES58871.2}

Sequence

Transcript Sequence

>Glyur000097s00008334.1
TTCAAACTGAAACCTCTAGTAGTACAGCAAAAAGAGAACACTCACGAGACAAAGCAAGGTTTATATACCTTTTTCTATGTCTCTTCTCATTCACTAGTTTTTCATTTTTAAAAAAACTGATACTAAATAACAACAAAATCAACACAAAAATTGCCTTCTTGTTACCTCTCAAAACTCCCACACATTTCCTCACCAAAAAAANTTGACTTTTTTTGGGGTTTCTATAAGTTGAACACCCTTCCCCATAACAAACCCAACCATGAAAGGCTCCACTACAGAGCCAACCAATGACACAAGCATTGACATTGATNATTATTCCTCTTGCAGAAGAGTGTCTTTCTCTGAAGAACCACCACAGTACCACCCAAATGGATCAGATCAGCCACAACACCAACAACACCAACAACAACACAATCACAATAATAGTGTTCCTTTGCTTCTTCAACCATCTTATGCAAGATCAAAGTCAATGATCTATGATGAGCTTCGAAACTTCCGAATATGCCTCAAGTGGTGTGCACTTGACCACTCTTCCTGTGTTGGGAGACTCATATCCTACGTGTCCTTCATCTTCCTCGCTCTCATTGTCCCTCTCTTCACCTCACTCTTCGTTCAAGTCTCTGCCTCTTCCCCTGAAGATGACCCAATCTCCCTCAACAAGCTTGTCCAAATACCAGAGTCTGGCCTCGCCATCATTGCCTTCTTCACTCTCTNCCGTTTCTTCCGAAGGTATGGCCTAAGGCAGCTTCTGTTTCTAGATGCATTGCAGGACGACACTACTTATGTTCGACGCGGGTACGCACGAGAGCTTGAGAAAGCCTTCAGATACTTAGCATACATAATTCTACCCTCCTTCTTCGTTGAACTCGTACACAAAATCATATTCTTCTCAGCGGTTAGGATTTCGGCGCCACGCATCAGCCCCGGGTTCCCTCTGAACTCGATCGTGTTTGTGTTGGTGTTGGTTTCTTGGGTGTACAGAACTGGGGTGTACCTGTTGGTGTGTGTGATCTTCAGGCTAACTTGCCAGCTCCAGATACTGAGGTTTGAAGGGGTTCACAAGCTGTTTGAAGTGTGTGGGTCTGATTCAGTTGTGATATTTAAGGAACATGTGAGGATTAGAAGGCAATTATGGGTTATAAGTCATAGGTATAGGTTTTTCATAGTTGGGTGTGTGGCCACAATGACCGTTAGTCAGTTGGGTGCTCTGTTGCTGGTTTTGGCTTCCAAGTGTGACAAGACCTTCTTCAATTCTGGTGACCTTTTGATTTGTTCAGCTGTGCAATTGAGTGGCTTCTTCTTGTGCGTCTTAGGTGCAGCTAAAATCACACACAGAGCTCAAGGAATCGTGTCAATTGCCACACGATGGCACATGTTGGTGACTAGTTCTTCTGCTGAATCAGAACAGTGTAAAGATCAAATGTCTGAGGGGCTAGTCAGTGATAGTGATTCTGATTCCTCAGATATACACATATCAGTAATCCCACAACGACTTTCCTCTTTCCATACCAGACAATCTTTAGTGACATATTTACAACACAACCATGGGGGGATAACACTGTATGGGTTTACACTTGATCGAGGATTGCTTCATACTCTATTTGCCTTTGAGTTTTCTTTGGTGCTTTGGGTTCTAAGTAAGGTGGTTGTCTTGTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	295032	297917	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008334.1	PF12056.3	DUF3537	74	450	6.10E-120

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.242
SRR1783600	control	0.238
SRR1783602	moderate drought stress	0.361
SRR1811619	moderate drought stress	0.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.306
DRR006520	Root Summer glycyrrhizin high producing strain	1.341
DRR006521	Root Winter glycyrrhizin high producing strain	0.063
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.200
DRR006524	Root Summer glycyrrhizin low producing strain	1.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.053
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.068

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.436
SRR2868004	Drought Stress (root)	0.933
SRR2967015	Control (root)	0.367

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.066
SRR9715740	Leaf	2.240
SRR9715741	Leaf	2.075
SRR9715739	Root	0.149
SRR9715742	Root	0.414
SRR9715743	Root	0.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.096
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.441
SRR8400027	Control - Root	0.413