Gene detail information of Glyur000097s00008324 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24590.1 | 1.00E-37 | RNA recognition motif and CCHC-type zinc finger domains containing protein |
| NR | XP_004498562.1 | 2.32E-107 | PREDICTED: serine/arginine-rich splicing factor RSZ22-like [Cicer arietinum] |
| Swissprot | tr|Q69KL9|RZ21A_ORYSJ | 2.00E-65 | Serine/arginine-rich splicing factor RSZ21A |
| trEMBL | tr|C6SVE9|C6SVE9_SOYBN | 6.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G29080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 253961 | 258211 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008324.1 | PF00076.17 | RRM_1 | 4 | 61 | 8.70E-17 |
| Glyur000097s00008324.1 | PF00098.18 | zf-CCHC | 94 | 109 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.825 |
| SRR1783600 | control | 64.300 |
| SRR1783602 | moderate drought stress | 45.252 |
| SRR1811619 | moderate drought stress | 45.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 72.657 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.643 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 92.912 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 89.831 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.221 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.604 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 207.489 |
| SRR2868004 | Drought Stress (root) | 186.043 |
| SRR2967015 | Control (root) | 166.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 75.045 |
| SRR9715740 | Leaf | 84.757 |
| SRR9715741 | Leaf | 89.471 |
| SRR9715739 | Root | 82.728 |
| SRR9715742 | Root | 80.273 |
| SRR9715743 | Root | 76.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 80.658 |
| SRR8749028 | MeJA induced 9h | 55.181 |
| SRR8749029 | MeJA induced 9h | 56.187 |
| SRR8749030 | Uninduced | 11.528 |
| SRR8749031 | Uninduced | 10.564 |
| SRR8749032 | Uninduced | 16.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 199.487 |
| SRR8400027 | Control - Root | 202.069 |