Gene detail

Gene detail information of Glyur000097s00008323.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78570.1	0	rhamnose biosynthesis 1
NR	XP_003545554.1	0	PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max]
COG	YP_006370129.1	6.00E-91	MUM4 (mucilage-modified 4) [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q9SYM5\|RHM1_ARATH	0	UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305\|PubMed:17190829}
trEMBL	tr\|I1M9T9\|I1M9T9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G17880.1}

Sequence

Transcript Sequence

>Glyur000097s00008323.1
ATGTATGAACCAAAAAACATCCTCATAACTGGGGCTGCTGGTTTCATAGCCTCTCATGTCACCACCAGGCTAATCAACAGGTACCCTAGCTACAAGATTGTAGCTCTTGATAAGCTAGACTATTGCTCCACTTTCAAGAATCTGCAATCATGCACTTCATCACCAGAGTTCAAATTCATCAAGGGTGATATAGCTTGTGCTGATATTGTGAACCATCTTTTGATAGAAGAGGAAATAGACACCATTATGCATTTTGCTGCTCAAACCCATGTGGACAATTCCTTTGGAAACTCCATGGAATTCACCTACAATAACATATATGGCACACATGTGCTCCTTGAAGCCTGCAGGGTCACCAATTGTGTCAAAAGGTTCATCCATGTTAGCACTGATGAAGTCTATGGTGAAACCGACTTAGAGGCCGATATTGGGAATCATGAGACATCTCAACTTCTACCCACAAACCCTTATTCTGCAACAAAAGCAGGTGCAGAAATGTTGGTGATGGCTTATCACAGCTCCTATGGTCTTCCAATTATAACTACGCGAGGCAATAATGTTTATGGTCCTAACCAATACCCGGAAAAGCTTGTTCCTAAGTTCATTCTTCTTGCCATGAAAGGTCAGAAATTGCCAATACATGGTGATGGATCCAATGTGAGGAGCTACCTTCATTGTGGAGATGTGGCAGAAGCATTTGATGTCATACTTCATAATGGAGTGATTGGCCAAGTCTATAACATTGGCACCAAGAAGGAAAGGAGTGTGTTAGATGTGGCAGAGGACATTTGCAAGCTCTTTAAGTTGGATCCAAAACAGGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGACAAGAGATATTTCCTTGATGATCAAAGGCTCAAGCAGCTTGGTTGGGAGGAGAGAACTCCTTGGGAGGAAGGACTTAAGATGNCAATTGATTGGTACAAAAACAACCCTGATTGGTGGGGTGATGTATCTACTGCTTTAAACCCGCATCCGCGTTTCTCAGCAATCAATCTCTCTGATGAAGCTCAATGGTGCTTCCAATATGGATACTCAAGGCTATTGAGGTCATTTACCGAAGTCNGTCGCAGTAGTTCAGGGTTGAAGTTCCTTATATATGGGAGGACGGGTTGGATTGGAGGGTTGTTGGGGAAGCTTTGTGATGAGGAGAGGATTGCTTGGGAGTATGGGAGAGGAAGACTAGAAGATAGGAAATCACTTGTGGAGGATATAAAGAGGGTAAAGCCAACCCATGTGTTAAGCGCAGCTGGTGTTACTGGAAGGCCAAATGTGGATTGGTGTGAATCACACAAAGTTGAAACAATTAGGACAAATGTAGTTGGCACATTAACTCTAGCTGATGTTTGCAGAGAAAATGGTTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGATCACCCTCTAGGATCAGGCATTGGGTTCAAGGAGGAGGACAAGCCAAATTTCATTGGTTCCTTTTATTCAAAGACCAAGGCCATGGTGGAGGACCTCCTAAAAGATTATGACAATGTGTGCACATTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTAGTCGTTACAACAAGGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAGCTCCTACCCATATCCATTGAGATGGCTAAGAGGAACTTAAAAGGGATATGGAACTTCACCAACCCAGGAGTCATAAGCCACAATGAGATATTAGAGTTGTATAGGGATTACATAGACCCTCAATTTAAATGGAAGAATTTTGATTTGGAAGAACAGGCAAAGGTAATAGTTGCTCCAAGGAGCAACAATGAAATGGATGCCTCCAAGCTCAAAAAGGAGTTCCCCGATTTGTTGTCCATCAAAGATTCCGTTATCAAGTTTGTCTTTGAGCCTAACAATAAAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	249574	251824	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12450	RHM	EC:4.2.1.76	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0009225 nucleotide-sugar metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0008460 dTDP-glucose 4,6-dehydratase activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008323.1	PF01370.16	Epimerase	7	249	6.90E-54
Glyur000097s00008323.1	PF04321.12	RmlD_sub_bind	372	545	5.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.037
SRR1783600	control	0.037
SRR1783602	moderate drought stress	0.019
SRR1811619	moderate drought stress	0.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.056
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.001
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.032
SRR9715741	Leaf	0.031
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.036
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.034
SRR8400027	Control - Root	0.039