Gene detail information of Glyur000097s00008313 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10690.1 | 0 | pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein |
| NR | XP_004498571.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like [Cicer arietinum] |
| Swissprot | tr|Q8VYD6|PP374_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g10690 |
| trEMBL | tr|I1M9T1|I1M9T1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G17650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 180398 | 186771 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008313.1 | PF13041.1 | PPR_2 | 96 | 144 | 2.00E-10 |
| Glyur000097s00008313.1 | PF13041.1 | PPR_2 | 224 | 271 | 2.70E-09 |
| Glyur000097s00008313.1 | PF01535.15 | PPR | 302 | 329 | 0.001 |
| Glyur000097s00008313.1 | PF01535.15 | PPR | 339 | 364 | 0.14 |
| Glyur000097s00008313.2 | PF13041.1 | PPR_2 | 96 | 144 | 2.00E-10 |
| Glyur000097s00008313.2 | PF13041.1 | PPR_2 | 210 | 257 | 2.60E-09 |
| Glyur000097s00008313.2 | PF01535.15 | PPR | 288 | 315 | 0.001 |
| Glyur000097s00008313.2 | PF01535.15 | PPR | 325 | 350 | 0.13 |
| Glyur000097s00008313.3 | PF13041.1 | PPR_2 | 96 | 144 | 2.00E-10 |
| Glyur000097s00008313.3 | PF01535.15 | PPR | 212 | 240 | 0.0047 |
| Glyur000097s00008313.3 | PF13041.1 | PPR_2 | 243 | 296 | 3.70E-10 |
| Glyur000097s00008313.3 | PF01535.15 | PPR | 321 | 346 | 0.13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.833 |
| SRR1783600 | control | 1.824 |
| SRR1783602 | moderate drought stress | 1.947 |
| SRR1811619 | moderate drought stress | 2.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.534 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.859 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.735 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.647 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.988 |
| SRR2868004 | Drought Stress (root) | 3.087 |
| SRR2967015 | Control (root) | 2.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.714 |
| SRR9715740 | Leaf | 23.921 |
| SRR9715741 | Leaf | 12.564 |
| SRR9715739 | Root | 1.078 |
| SRR9715742 | Root | 1.466 |
| SRR9715743 | Root | 0.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.419 |
| SRR8749028 | MeJA induced 9h | 3.232 |
| SRR8749029 | MeJA induced 9h | 2.616 |
| SRR8749030 | Uninduced | 1.119 |
| SRR8749031 | Uninduced | 0.618 |
| SRR8749032 | Uninduced | 0.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.448 |
| SRR8400027 | Control - Root | 4.000 |