Gene detail

Gene detail information of Glyur000097s00008306

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24520.1	0	H(+)-ATPase 5
NR	KGN52915.1	0	hypothetical protein Csa_4G006220 [Cucumis sativus]
COG	YP_005270382.1	5.00E-158	plasma-membrane proton-efflux P-type ATPase [Acetobacterium woodii DSM 1030]
Swissprot	tr\|Q7XPY2\|PMA1_ORYSJ	0	Plasma membrane ATPase
trEMBL	tr\|M0S580\|M0S580_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P04890_001}

Sequence

Transcript Sequence

>Glyur000097s00008306.1
ACNCCCCACACCCAAAAGGCTCAAAAAAAGTTGGACACGCAGAGGACTTCACGGCTTCACTTCACATCACTCACACACACCCTAAAAAGTCCCCAATAGCCTAACTCCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTCCTCCCTGCATTTATTTTATTTTGGACTTTTTCACTCATTCCATGACCCAGCAACACCCTTCAATCCCCTCTATTTAAACCCACTCTCTACCATAATTCATACTAACATTATTATCAGTATTTGGTATCTGCCGCTGCCACAACAGCTTCTCCTCCTTCAAACATGGGAGGCATCAGCCTCGAAGAGATCAAAAATGAGAACGTCGATCTGGAACGCATTCCAATAGAGGAGGTGTTTGAGCAGCTGAAATGTTCAAGGCAAGGTCTCACATCAGAGGAAGGAGCCAACCGGCTTCAAGTCTTTGGACCCAACAAATTGGAAGAGAAAAAAGAGAGCAAGTTTTTGAAGTTCTTGGGTTTTATGTGGAACCCCTTGTCATGGGTCATGGAAGCTGCTGCCATAATGGCCATTGCTTTGGCAAATGGAGGAGGAAGGCCCCCAGATTGGCAGGATTTTGAAAACAATGCTGGCAATGCTGCTGCTGCTCTAATGGCTGGTGAATCTCTTCCTGTGACGAAGAATTCCTCCGATGAGGTGTTTTCAGGATCAACTGTGAAGAAGGGTGAGATTGAAGCAGTTGTGATTGCTACTGGAGTGCACACATTTTTTGGTAAAGCAGCTCATCTGGTGGACAGCACTAACCAAGTTGGACACTTTCAGAAAGTGCTTACAGCTATTGGTAATTTCTGCATCTGCTCAATTGCTGTTGGAATAATCATAGAGCTCATAGTGATGTACCCAATACAACACCGCAAGTACAGAGATGGAATTGACAATCTGTTGGTGCTCTTGATTGGAGGGATTCCCATTGCCATGCCAACTGTTTTGCTTTCCCAGCAGGGTGCAATTACAAAACGAATGACTGCTATTGAGGAAATGGCTGGGATGGATGTTCTCTGTAGTGATAAAACTGGGACTCTCACTCTCAATAAGCTCAGTGTTGATAGAAACTTGATTGAGGTGTTTGCTAAGGGCATTGAGAAGGAGTATGTGATCCTTCTAGCAGCCAGAGCTTCTAGGACTGAAAATCAAGATGCCATAGATGCTGCAATTGTTGGGATGCTTGCTGACCCAAAGGAGGCAAGAGCTGGTATTAGGGAGGTGCATTTCCTTCCATTCAATCCTGTAGACAAGAGGACTGCTTTAACCTACATTGATTCTGATGGAAATTGGCATCGATCTAGCAAAGGGGCTCCTGAGCAGATATTGAACCTTTGCAACTGCAAAGAGGATGTGAGGAAAAGGGTTCATGCAGTAATTGATAAGTATGCTGAACGTGGACTTCGATCTTTAGGTGTTGCAAGACAGGAAGTCCCTGAGAAAACAAAAGATAGTCCTGGTGGACCATGGCAATTTGTTGGTTTGCTACCATTGTTTGATCCTCCTAGGCATGACAGTGCTGAAACCATTAGAAGAGCTCTTAACCTTGGTGTGAATGTCAAAATGATCACCGGGGATCAACTTGCCATTGGGAAGGAAACTGGCAGAAGGCTCGGAATGGGAACAAACATGTACCCATCATCTGCATTGCTTGGCCAAGACAAGGATGCTTCTATTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTATTTCCTGAACACAAATATGAAATCGTCAAAAGGCTACAAGAGAAGAAGCATATCTGTGGAATGACAGGAGATGGTGTAAATGATGCTCCTGCATTGAAGAAAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCCGCTAGAAGTGCTTCTGATATTGTCCTCACTGAACCTGGTCTGAGTGTCATTATTAGTGCAGTGCTCACTAGCAGGGCGATTTTCCAAAGGATGAAGAATTATACCATTTATGCTGTGTCAATCACCATTCGTATTGTGTTTGGTTTCATGTTTATTGCATTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTTTTGATTATTGCCATACTAAATGATGGCAGTTACATGGCACTAATGACAGTAGTATTTTTCTGGGCAGTGAAAGATACCAACTTCTTCTCGAACAAGTTTGGTGTGAGGCCTTTGAAAAATAGTCCTGAGGAGATGATGGCAGCTTTATACCTACAAGTCAGTATAATAAGCCAGGCACTTATTTTTGTAACTAGGTCCCGCAGCTGGTCTTTTGTTGAAAGACCTGGTCTTCTCCTACTAAGTGCTTTTATGATTGCTCAGCTGGTTGCAACTTTTATAGCAGTGTATGCTAATTGGGGCTTTGCAAGAATAAAGGGAATGGGATGGGGTTGGGCTGCTTGGGATAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAAGACTATGGCAAAGAAGAGAGGGAAGCACAGTGGGCAGCAGCACAGAGGACACTTCATGGTCTTCAGCCTCCGGAAACCTCCAACCTTTTCAATGAGAAGAATAGCTATAGGGAGCTATCAGAGATTGCAGAGCAAGCCAAGAGACGAGCTGAAGTTGCAAGGCTTAGGGAGCTTCATACTCTGAAGGGACATGTTGAGTCGGTGGTGAAGCTGAAGGGACTTGACATTGATACAATTCAGCAGCACTATACAGTTTAAAGAGCTTGGAGAATCTTTCAAGAAGCACTGGTTCAGTGNTTTTCTATGAACAAATTCACATATAATGACGAAGAAGGACTCAAAGTCCCTTAATCAATCTGTCTTTTTTAAGTTATAAAAAAATGACAGTCCTGTAAAAAATTGGAGGGGTGATCCTTTTCCCATCTATGCTTAGAGGAGATACTATTATCAAGTACCAAATAACACCACCATTGATAGGGTTTACTTTTCAGTTTTCATTTTTTTTTTCTTGGATAAAATTAGTTCTATTAAGGTCACATTAAAAGCTCAATATATTGGTATTAATTAATACCGTTGACTAGTACTGAATTCAATCTTAATGTGTTTTCTCTCCCCTTCCCTATATCCAGCAACGTTAAAAGGAGGAATGCTAGTAGTACATTCTCTTTAGTAGAGCTCAAGGGAAATTCCCCAAATATNAAAGAGTATGTTGAAAGGTGCATTGGTAGAATTTCTCTGTTTTATCATCCCATTCCTACACCAGTCTTATACATTCTTTAAAACAGAAAAAAAAAAGGAACTAAAAGTAGTATTTGACAATGATCTCAGTTAACCATTGTGCAATCATGCCTGATTTCACCCTGGCTTCCNGTTTTGACCCCAATCCTCCCAAGCTTTATTATAGCATTTACAAAAGAAGTTTCAAAGGCTGTGTTGTTGGATGCAAACAAGTTCACTAGGTTTCTTGAACTTTTATGAGTAAACAAAGACTGATCAGAAGAAAGGAGTCCTTTTCCTTGCTGAAGATTCTTGTAGTACTGGTTATCAAATGTCCTAGGTGTAGTTGGGTCCATGTCAATGGCAATTCTGGGGTCTACATTTCTTGGACACACTTGCTGGAGCTGTTTTACATATGCATCATTAAGTGACGGATCAATTCTCTTCTTGCTTCTGAAGTTGTAAATTCTTTTGGAGAACTGGCTGCAGTGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	139177	147363	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01535	PMA1, PMA2	EC:3.6.3.6	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0006754 ATP biosynthetic process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0016887 ATPase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008306.1	PF00690.21	Cation_ATPase_N	18	81	5.40E-15
Glyur000097s00008306.1	PF00122.15	E1-E2_ATPase	107	237	1.50E-21
Glyur000097s00008306.1	PF00702.21	Hydrolase	242	519	2.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.578
SRR1783600	control	3.704
SRR1783602	moderate drought stress	2.800
SRR1811619	moderate drought stress	2.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.647
DRR006520	Root Summer glycyrrhizin high producing strain	18.765
DRR006521	Root Winter glycyrrhizin high producing strain	0.029
DRR006522	Root Winter glycyrrhizin high producing strain	0.058
DRR006523	Root Summer glycyrrhizin low producing strain	10.455
DRR006524	Root Summer glycyrrhizin low producing strain	10.528
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.873
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.599
SRR2868004	Drought Stress (root)	45.717
SRR2967015	Control (root)	31.153

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.684
SRR9715740	Leaf	35.489
SRR9715741	Leaf	44.120
SRR9715739	Root	1.816
SRR9715742	Root	16.927
SRR9715743	Root	15.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.720
SRR8749028	MeJA induced 9h	4.552
SRR8749029	MeJA induced 9h	1.951
SRR8749030	Uninduced	5.989
SRR8749031	Uninduced	5.470
SRR8749032	Uninduced	3.663

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.948
SRR8400027	Control - Root	26.973