Gene detail information of Glyur000097s00008299 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24490.2 | 3.00E-21 | replicon protein A2 |
| NR | XP_004498588.1 | 3.00E-81 | PREDICTED: replication protein A 32 kDa subunit A-like [Cicer arietinum] |
| Swissprot | tr|Q9ZQ19|RFA2A_ARATH | 1.00E-24 | Replication protein A 32 kDa subunit A |
| trEMBL | tr|V7CVJ8|V7CVJ8_PHAVU | 4.00E-72 | Uncharacterized protein {ECO:0000313|EMBL:ESW33295.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 99725 | 104841 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008299.1 | PF08784.6 | RPA_C | 51 | 158 | 5.90E-18 |
| Glyur000097s00008299.2 | PF01336.20 | tRNA_anti-codon | 70 | 106 | 0.00019 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.115 |
| SRR1783600 | control | 8.205 |
| SRR1783602 | moderate drought stress | 3.805 |
| SRR1811619 | moderate drought stress | 3.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.644 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.009 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.749 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.725 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.685 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.698 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.639 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.335 |
| SRR2868004 | Drought Stress (root) | 15.129 |
| SRR2967015 | Control (root) | 13.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.556 |
| SRR9715740 | Leaf | 1.399 |
| SRR9715741 | Leaf | 2.372 |
| SRR9715739 | Root | 3.251 |
| SRR9715742 | Root | 1.814 |
| SRR9715743 | Root | 1.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 64.880 |
| SRR8749028 | MeJA induced 9h | 22.402 |
| SRR8749029 | MeJA induced 9h | 31.671 |
| SRR8749030 | Uninduced | 1.070 |
| SRR8749031 | Uninduced | 1.019 |
| SRR8749032 | Uninduced | 1.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.227 |
| SRR8400027 | Control - Root | 14.038 |