Gene detail

Gene detail information of Glyur000097s00008293.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71990.1	7.00E-160	fucosyltransferase 13
NR	AAS59563.1	0	alpha 1,4-fucosyltransferase [Medicago truncatula]
Swissprot	tr\|Q9C8W3\|FUT13_ARATH	0	Alpha-(1,4)-fucosyltransferase
trEMBL	tr\|Q6Q8A9\|Q6Q8A9_MEDTR	0	Alpha 1,4-fucosyltransferase {ECO:0000313\|EMBL:AAS59563.1}

Sequence

Transcript Sequence

>Glyur000097s00008293.1
GAAGAGGACGACCCAACTGGTTTGGTTTGGTTTGGTACCTCACTTCTCCATTCTCATTTTCCATGTCCTCTCTCTTCTCCGCACTTCCACTTTCTCTCTCTAACGAAAGAGAGAGATAGAACAACCACCATGCTAGTGCCTCCCAAACCCATCAACACAGTCACCATCACAATCATGCTCGTCTTCACCTTCTTCCTCTTCTTCTTCTCCGGTTTCCTCCACTTCCCTTCCGTTTCCCCTTCTCTCGTTCCACCCTTCAACGGCCCCTTAACCTCCGACACCTCCGAACCCTTCACCGATCTGGTCGCCTCCTTCAGGAAATGGGACTCGCGTGTGGGTTGTGCTCGGTTCAGGGAGAAACCAAATGGGGTCTCCCTCAACATCTCAAAGGTTGCTTCTTTGCAAGGCGATTCTGCTTGTGGGGGCTTGTTACTCAACCATGTTAGCGTTTTGGTCAAAGGGTGGACTTGGATTCCTGATAATTTGGATAACTTGTACTCTTGTCCTTGTGGGTTGAGCTGTTTGTGGACCAAATCGTCCGTTCTCGCNGACAAGCCTGATGCTTTGTTGTTTGAATCGTCTACGCCTCCGATTCAGAGACACGTGGGAGAACCGCTTCGTGCTTACATGGATCTTGAAGCCGGTCGAAAGAGATCAGGCCGAGAGGATATATATATTAGTTATCATGCTGAAGATGATGTACAGTCAACCTATGCAGGCGCTCTATTTCACAACAGTCGAAACTATCACATCTCCAACACTAAAAACAATGATATACTTGTTTATTGGTCTTCATCGCGGTGTCTCTCTCAAAGGAATGAACTTGCCAAGAAACTCCTCGGCTTGCTGCCGCATCATTCATTTGGCAAGTGCCTAAACAATGTTGGTGGTCCAGACATGGCTCTTTCTTTCTACCCCGAGTGTGCAAACGATGCCGACGTTACCCCAAAATGGTGGGATCATTTGCACTGTGCCATGTCTCACTACAAGTTTGTTCTCGCAATAGAGAACACTTTCACGGAGAGTTACGTGACNGAGAAGTTATTTTATGCCCTGGACTCCGGCGCGGTTCCCATCTACTTTGGTGCACCAAACGTCATGGATTTTGTTCCTCCNCATTCAATAATAGATGGTAGGAAGTTCAGATCATTGGAAGAATTGGCTTCATATGTGAAGGCCGTAGCCAATGACCCGGTAGCGTATGCGGAATACCACGCATGGAGAAGGTGCGGTGTGCTTGGTAACTATGCGAAGACGCGAGCAGTGAGCCTTGACACATTGCCATGCCGGTTATGTGAGGCTGTGAGCAGAAAGGGTGGAAGAAATGCAAGAAGCTAGGTTGAGTTTATGAGCCAGGCTTGATAGAAGATTAGACAGATTGAATATAGGCTTGCAACCTTTGTACTGTATAGAGGGAGGTACACTGCTTGTTTCACAATTTGATTAAGAGNGGAAACAAAATCAGAGCAAAGTAACAGAAATAGATCGTAATTAAGGATCATTGCATTTGTTTTTTATTTTTTGTCCTTTTCTGACTTCAAATGTGTATAGGACGGGCACAGTGAAACAAGTCAATATGTCTGGCATTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00097	38536	42863	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT10

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14412	FUT13, FucTC	EC:2.4.1.65	Various types of N-glycan biosynthesis	map00513

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function
GO:0008417 fucosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000097s00008293.1	PF00852.14	Glyco_transf_10	226	438	4.90E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.797
SRR1783600	control	14.168
SRR1783602	moderate drought stress	11.227
SRR1811619	moderate drought stress	11.265

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.091
DRR006520	Root Summer glycyrrhizin high producing strain	15.802
DRR006521	Root Winter glycyrrhizin high producing strain	15.617
DRR006522	Root Winter glycyrrhizin high producing strain	15.264
DRR006523	Root Summer glycyrrhizin low producing strain	16.660
DRR006524	Root Summer glycyrrhizin low producing strain	16.695
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.739
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.566

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.724
SRR2868004	Drought Stress (root)	32.775
SRR2967015	Control (root)	28.797

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.784
SRR9715740	Leaf	19.556
SRR9715741	Leaf	22.014
SRR9715739	Root	17.450
SRR9715742	Root	16.575
SRR9715743	Root	15.534

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.127
SRR8749028	MeJA induced 9h	32.352
SRR8749029	MeJA induced 9h	29.630
SRR8749030	Uninduced	34.834
SRR8749031	Uninduced	35.867
SRR8749032	Uninduced	23.405

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.533
SRR8400027	Control - Root	19.957