Gene detail information of Glyur000097s00008282 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71960.1 | 1.00E-164 | ATP-binding casette family G25 |
| NR | XP_003555426.1 | 0 | PREDICTED: ABC transporter G family member 25-like [Glycine max] |
| COG | YP_708903.1 | 9.00E-15 | ABC transporter, ATP-binding component [Rhodococcus jostii RHA1] |
| Swissprot | tr|Q84TH5|AB25G_ARATH | 0 | ABC transporter G family member 25 |
| trEMBL | tr|I1NH97|I1NH97_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G31480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00097 | 4 | 6342 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000097s00008282.1 | PF01061.19 | ABC2_membrane | 175 | 381 | 2.00E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.716 |
| SRR1783600 | control | 9.816 |
| SRR1783602 | moderate drought stress | 3.918 |
| SRR1811619 | moderate drought stress | 3.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.566 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.767 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.630 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.736 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.906 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.960 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.141 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.765 |
| SRR2868004 | Drought Stress (root) | 54.190 |
| SRR2967015 | Control (root) | 47.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.823 |
| SRR9715740 | Leaf | 1.984 |
| SRR9715741 | Leaf | 2.688 |
| SRR9715739 | Root | 12.264 |
| SRR9715742 | Root | 14.734 |
| SRR9715743 | Root | 14.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.578 |
| SRR8749028 | MeJA induced 9h | 11.070 |
| SRR8749029 | MeJA induced 9h | 3.278 |
| SRR8749030 | Uninduced | 3.417 |
| SRR8749031 | Uninduced | 1.297 |
| SRR8749032 | Uninduced | 2.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.831 |
| SRR8400027 | Control - Root | 32.025 |