Gene detail

Gene detail information of Glyur000096s00005968

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51000.1	3.00E-117	alpha/beta-Hydrolases superfamily protein
NR	XP_004509321.1	0	PREDICTED: bifunctional epoxide hydrolase 2-like [Cicer arietinum]
COG	YP_003299257.1	2.00E-88	alpha/beta hydrolase fold protein [Thermomonospora curvata DSM 43183]
trEMBL	tr\|A0A072TSN0\|A0A072TSN0_MEDTR	0	Epoxide hydrolase {ECO:0000313\|EMBL:KEH20402.1}

Sequence

Transcript Sequence

>Glyur000096s00005968.1
TTGGGGGTTAGCAAGTCAAAGTTGTGCTCTGACCTCACTTTTGACATTTAGAATCCGCTTAGATGGATGTACTACTACTAATATTATTATTATAGCNAGCGTGTGTGAATGTGTCCTTCGTCTCAAAGATTAAACCTGCNGCTGTTGCTAGCGCGCTCCAACTTTTGTATGAGCCTCAAAACATATAGAGCAATTCGGCACCATGTCCATGATGAGTATTAATACTGAAGTGAATCACCAAAGAATCAAAACCAACGGGATATGGATGCACGTAGCAGAACAAGGGACAGGACCACTGGTTCTACTGCTTCACGGTTTCCCAGAAATATGGTATTCCTGGCGCCACCAACTCAACTACTTGGCCCACCATGGTTATCATGCGGTTGCACCTGATCTAAGAGGATACGGTGACTCTGATTCTCCCCTCAACCCCAGTTCCTACACCCTTCACCACATCCTAGGTGACCTTATTGGTCTGCTTGACCATTTTGGTGAACAACAGGTATTTGTAGTTGGATCTGATTGGGGAGCAAACATTGGNTGGCACCTGAGTCTGTTCAGGCCTGACAGAGTGAAGGGGTTTGTTGCTCTGGGTGTTCCTTACTTCCCAAGATCTCCAACTGCTAAAACAGTTGAAACTATCAGGAAAATATATGGAGATGGGAGCCATGTCTGCCAGTTCCAGGAACCAGGTCGTGCAGAGAGAGCTTTTGCTAGATATGATTGTTTGACAGTGGTGAAGAAGTTTTTGCTGGTTACGTGGACAGAGTTTCTAGCGGCTCCTCCTGGCATGGAGATCGTGGATTTCTTGCCAACACCTTCGGTTTTGCCATCGTGGATAACTGAGGAGGAACTCATGGTCTTTGCAGACAAATTCCAGGAGTCTGGTTTCACTGGTCCACTCAATTACTACAGGGCAATGGACCTAAACTGGGAGCTTCTTGCACCATGGCAAGGATCAAAGATAACGGTTCCAACGAAGTTCATTGCCGGGAACAAAGACGTCGGTTTTGCAAGTGGNACAAAGGATTTTGTGGAAGGTGATGTCTTCAAGAGCCTTGTTCCCGACCTNGAAGTGGTTATACTAGACGGCCACCACTTCATACATCAAGAGAAAGCACAAGAAGTTTCAGAGGAAATCCTTTCCTTCATCCGAAAATTATCTCTGGATTAGGGAATCTTCAACANTTTCAGTTTGATACCCTTTTTCATCCTTAATGGTTTATAAGCAATTTATAAAGTATTGCCAAGCCCTTTGTCAGGTTGNGGCACGGAAGCTTATAGTTATAACTATTACTTAGTCTTAGTCTTAGTGTAATATTCACGAAATATATAAGATTCTNATTTTTCATTGGCTATATAATCTTGGTCTCCTTAATTTAAATTACTTTATANAAATGGAACATGGACATAAAGGGCAATGACAAGCATGCTTTTTTATCTCCAAAAATTGCATCCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00096	336973	339057	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000096s00005968.1	PF12697.2	Abhydrolase_6	33	311	5.50E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.816
SRR1783600	control	4.938
SRR1783602	moderate drought stress	5.615
SRR1811619	moderate drought stress	5.529

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.662
DRR006520	Root Summer glycyrrhizin high producing strain	0.647
DRR006521	Root Winter glycyrrhizin high producing strain	5.114
DRR006522	Root Winter glycyrrhizin high producing strain	5.171
DRR006523	Root Summer glycyrrhizin low producing strain	5.882
DRR006524	Root Summer glycyrrhizin low producing strain	5.687
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.515
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.433

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.152
SRR2868004	Drought Stress (root)	35.719
SRR2967015	Control (root)	22.794

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.033
SRR9715740	Leaf	5.980
SRR9715741	Leaf	20.775
SRR9715739	Root	4.657
SRR9715742	Root	12.389
SRR9715743	Root	10.511

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.135
SRR8749028	MeJA induced 9h	55.251
SRR8749029	MeJA induced 9h	40.665
SRR8749030	Uninduced	134.117
SRR8749031	Uninduced	137.846
SRR8749032	Uninduced	82.833

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.994
SRR8400027	Control - Root	8.051