Gene detail

Gene detail information of Glyur000096s00005956

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50960.1	5.00E-78	phosducin-like protein 3 homolog
NR	XP_004509307.1	1.80E-147	PREDICTED: thioredoxin domain-containing protein 9 homolog [Cicer arietinum]
COG	YP_007174826.1	3.00E-13	thioredoxin [Caldisphaera lagunensis DSM 15908]
Swissprot	tr\|Q8LCV1\|PLP3B_ARATH	2.00E-125	Thioredoxin domain-containing protein PLP3B
trEMBL	tr\|I3SH25\|I3SH25_LOTJA	3.00E-143	Uncharacterized protein {ECO:0000313\|EMBL:AFK39567.1}

Sequence

Transcript Sequence

>Glyur000096s00005956.1
AACGGGCCCAGCCCATTTCCATTTCCCCTTCCTCCCTCCTTTCTGACGACGCAGATCGCTGCAGCTTCGAATTCCATCAACCAAAACACACACACACACACACACAGAGAAGGAGCAGCAAAGCTTCAATTTTTGAAGAAGTTCTTTGCCTCCTGAATTCACCACCCGCATTGAAAAGACACCCAAACCTTCATCCAGATCTTANCGAGATGGATCCAAACGCTGTGAAGTCCACTTTGTCCAACCTGGCGTTCGGAAACGTCATGGCCGCAGCTGCCCGTGATTATCAGAAGGAAGTACTCGCTCAAGAGAAGGCACAAGCATCGAGTTCTGTAAATGAGGAAGTTGACCTTGATGAGTTGATGGATGATCCTGAGTTGGAAAAATTGCATGCAGATAGGATTGCAGCTCTTAAGAAAGAAGCAGAGAAACGGGAGGCGTGGAAGAAGAAAGGTCATGGGGAATACAGGGAGATAACTGAGGGGGATTTCTTGGGTGAAGTCACTGGAAGTGAAAAAGTGATTTGTCATTTCTACCATAAGGAGTTCTATCGATGCAAGATAATGGATAAGCATTTAAAGTCCCTTTCAACAAAGCATATTGACACAAAGTTTATCAAGCTTGATGCAGAGAATGCGCCATTCTTTGTTGCAAAATTGGCAATCAAGACTTTGCCTTGTGTCATAATGTTCAGACAAGGAGTTGCAGTAGATAGATTGGTAGGATTTCAAGATCTGGGAGGGAAAGATGATTTTACCACAAAATCGCTCGAGGCTCTGCTATTAAAGAAAGGCATTATTGACGAGAAGAAAGATGAGAATGATGAAGACGATGTATATCATGAAAGTACACGGAGAACCGTTAGATCCTCCGTGCTTGCTGATTCTGATTCTGATTAAAATTAATCAGCTGGTGGGATCATAAAAATCTGCAGTTTATTTTGTTCATATCTTTCTTGGATTTCTGGTTTGTATAATCAGTGTTACATTTTCTGTTTGTTTACTTATGATGGGTGGGGGTTTGAATTGAATTCGTTGCAATCCTACAAAAACTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00096	283588	286056	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000096s00005956.1	PF00085.15	Thioredoxin	90	173	4.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.346
SRR1783600	control	15.593
SRR1783602	moderate drought stress	16.067
SRR1811619	moderate drought stress	16.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.735
DRR006520	Root Summer glycyrrhizin high producing strain	37.956
DRR006521	Root Winter glycyrrhizin high producing strain	27.963
DRR006522	Root Winter glycyrrhizin high producing strain	27.066
DRR006523	Root Summer glycyrrhizin low producing strain	25.816
DRR006524	Root Summer glycyrrhizin low producing strain	25.216
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.036
SRR2868004	Drought Stress (root)	29.318
SRR2967015	Control (root)	30.537

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.777
SRR9715740	Leaf	13.309
SRR9715741	Leaf	15.009
SRR9715739	Root	2.631
SRR9715742	Root	11.508
SRR9715743	Root	10.219

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.061
SRR8749028	MeJA induced 9h	22.495
SRR8749029	MeJA induced 9h	12.528
SRR8749030	Uninduced	8.706
SRR8749031	Uninduced	4.570
SRR8749032	Uninduced	4.488

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.157
SRR8400027	Control - Root	41.804