Gene detail information of Glyur000096s00005953 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50930.1 | 1.00E-146 | cytochrome BC1 synthesis |
| NR | XP_007156079.1 | 0 | hypothetical protein PHAVU_003G256600g [Phaseolus vulgaris] |
| COG | YP_007098995.1 | 8.00E-29 | AAA+ family ATPase [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|Q9SL67|PRS4B_ARATH | 5.00E-14 | 26S proteasome regulatory subunit 4 homolog B |
| trEMBL | tr|V7CFE5|V7CFE5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28073.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 279769 | 281716 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005953.1 | PF14363.1 | AAA_assoc | 39 | 140 | 1.40E-23 |
| Glyur000096s00005953.1 | PF00004.24 | AAA | 267 | 402 | 1.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.449 |
| SRR1783600 | control | 0.411 |
| SRR1783602 | moderate drought stress | 0.128 |
| SRR1811619 | moderate drought stress | 0.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.393 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.329 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.265 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.769 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.013 |
| SRR2868004 | Drought Stress (root) | 4.582 |
| SRR2967015 | Control (root) | 3.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.366 |
| SRR9715740 | Leaf | 12.841 |
| SRR9715741 | Leaf | 19.682 |
| SRR9715739 | Root | 4.140 |
| SRR9715742 | Root | 7.197 |
| SRR9715743 | Root | 6.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.931 |
| SRR8749028 | MeJA induced 9h | 3.771 |
| SRR8749029 | MeJA induced 9h | 2.469 |
| SRR8749030 | Uninduced | 2.332 |
| SRR8749031 | Uninduced | 1.868 |
| SRR8749032 | Uninduced | 4.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.743 |
| SRR8400027 | Control - Root | 2.217 |