Gene detail information of Glyur000096s00005951 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66420.2 | 0 | |
| NR | XP_004509303.1 | 0 | PREDICTED: UPF0261 protein SACE_5696-like [Cicer arietinum] |
| COG | YP_003371424.1 | 7.00E-118 | transcriptional regulator [Pirellula staleyi DSM 6068] |
| trEMBL | tr|G7LDW3|G7LDW3_MEDTR | 0 | UPF0261 SACE-like protein {ECO:0000313|EMBL:AET03879.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 265037 | 273030 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005951.1 | PF06792.6 | UPF0261 | 11 | 432 | 2.60E-154 |
| Glyur000096s00005951.1 | PF09370.5 | TIM-br_sig_trns | 488 | 743 | 4.70E-121 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.062 |
| SRR1783600 | control | 5.099 |
| SRR1783602 | moderate drought stress | 3.936 |
| SRR1811619 | moderate drought stress | 3.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.170 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.127 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.093 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.489 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.414 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.704 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.002 |
| SRR2868004 | Drought Stress (root) | 10.527 |
| SRR2967015 | Control (root) | 9.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.509 |
| SRR9715740 | Leaf | 6.476 |
| SRR9715741 | Leaf | 6.767 |
| SRR9715739 | Root | 1.147 |
| SRR9715742 | Root | 3.407 |
| SRR9715743 | Root | 3.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.466 |
| SRR8749028 | MeJA induced 9h | 2.041 |
| SRR8749029 | MeJA induced 9h | 1.406 |
| SRR8749030 | Uninduced | 0.233 |
| SRR8749031 | Uninduced | 0.270 |
| SRR8749032 | Uninduced | 0.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.866 |
| SRR8400027 | Control - Root | 8.547 |