Gene detail

Gene detail information of Glyur000096s00005947.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11480.1	6.00E-69	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	KHN22766.1	0	Salicylate O-methyltransferase [Glycine soja]
COG	NP_924885.1	5.00E-17	cyclopropane-fatty-acyl-phospholipid synthase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9SPV4\|SAMT_CLABR	2.00E-130	Salicylate carboxymethyltransferase
trEMBL	tr\|I1MNB5\|I1MNB5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G24810.1}

Sequence

Transcript Sequence

>Glyur000096s00005947.1
ATGAATGGAGGTATCGGAGAAGCTAGCTATGCAAACAACTCCTTACTTCAGCAAAAGGTGATTTGTTTGACAAAGCCCATAAGAGAGGAAGCCATAACCAGCCTATATTGCAACACACTCCCGAGAAGCCTGGCAATTGCAGACATGGGTTGCTCTTCTGGACCAAACACTCTGTTGGTGNTTTCAGAAGTTATCAAGCTTGTGGAGACTCTTTGCAGAAAGCTGAATCATAAATCTCCCCAATACAATGTCTTTCTGAACGATCTACCAGGGAACGACTTCAACAACATCTTTATGTCCCTTGACAGCTTCAAAGAGAAACTATGTGATGAAATGAAAANTACTGAAANGGGTCCATGCTACTTCTTTGGGGTTCCCGGTTCTTTCTATGGCAGAGTTCCTGAGGACATAGACAACAATAAGGGAAATATTTACTTGGCCAGCACCAGCCCCACAAATGTGGTCAAGGCTTACTATGAGCAATTTCAAAGGGATTTCTCTCTTTTTCTAAAGTGTCGTGCAGAGGAACTAGTTGAAGGGGGTCGCATGATTCTAACACTTTTGGGAAGAAGAAGCGACGATCCATGTAGCAAGGAGGGTGGCTACATTTGGGAGCTTATGGCTGTGGCTCTTAATGATATGGTCTTGCAGGGAGTGATAAAAGAAGAGCAACTGGATACTTTCAACATCCCTAAGTATACTCCATCTCCATCTGAAGTGAAATTGGAAGTTGTGAACGAAGGATCGTTTGCCATCAATCGACTGGAGGTGTCTGAAGTGAATTGGAATGCTCTTGACTTTGAATCTGAAATATCTGAATCGCTCAGTGATGATGGATACAATGTGGCACAGTGCATCAGGGCTGTGGCTGAACCTTTGCTAGTTAGCCACTTTGGTGAAGCTATCATTGAACAGGTTTTCAACCGCTACCGAGAAATCTTGGCTGATCGGATGTCCAAGGAGAGAACNAAGTACATCAATGTTACCGTTTTGTTGACTAGAAAGCCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00096	251918	253927	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08241	E2.1.1.141	EC:2.1.1.141	alpha-Linolenic acid metabolism	map00592

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000096s00005947.1	PF03492.10	Methyltransf_7	30	133	3.90E-33
Glyur000096s00005947.1	PF03492.10	Methyltransf_7	134	335	5.60E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.963
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.136

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.075
SRR2868004	Drought Stress (root)	0.042
SRR2967015	Control (root)	0.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.754
SRR9715740	Leaf	5.223
SRR9715741	Leaf	29.486
SRR9715739	Root	0.035
SRR9715742	Root	0.051
SRR9715743	Root	0.130

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.008
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.000