Gene detail information of Glyur000096s00005938 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66470.1 | 1.00E-134 | RNA binding;GTP binding |
| NR | XP_007156068.1 | 0 | hypothetical protein PHAVU_003G255600g [Phaseolus vulgaris] |
| COG | YP_003289545.1 | 1.00E-76 | GTP-binding protein Era [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|O82653|ERG_ARATH | 2.00E-15 | GTP-binding protein ERG |
| trEMBL | tr|V7CCY5|V7CCY5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28062.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 203658 | 209390 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005938.1 | PF01926.18 | MMR_HSR1 | 126 | 243 | 1.70E-21 |
| Glyur000096s00005938.1 | PF07650.12 | KH_2 | 346 | 382 | 3.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.716 |
| SRR1783600 | control | 18.695 |
| SRR1783602 | moderate drought stress | 23.436 |
| SRR1811619 | moderate drought stress | 23.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.590 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.980 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.283 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.091 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.236 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.265 |
| SRR2868004 | Drought Stress (root) | 8.038 |
| SRR2967015 | Control (root) | 10.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.916 |
| SRR9715740 | Leaf | 37.380 |
| SRR9715741 | Leaf | 13.249 |
| SRR9715739 | Root | 1.328 |
| SRR9715742 | Root | 4.606 |
| SRR9715743 | Root | 3.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.074 |
| SRR8749028 | MeJA induced 9h | 7.604 |
| SRR8749029 | MeJA induced 9h | 6.436 |
| SRR8749030 | Uninduced | 4.367 |
| SRR8749031 | Uninduced | 3.250 |
| SRR8749032 | Uninduced | 2.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.566 |
| SRR8400027 | Control - Root | 10.940 |