Gene detail information of Glyur000096s00005931 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36530.2 | 2.00E-137 | alpha/beta-Hydrolases superfamily protein |
| NR | KHN11109.1 | 0 | Putative hydrolase yugF [Glycine soja] |
| COG | YP_007091670.1 | 2.00E-75 | alpha/beta fold family hydrolase [Chroococcidiopsis thermalis PCC 7203] |
| Swissprot | tr|Q9FFZ1|PPH_ARATH | 1.00E-33 | Pheophytinase, chloroplastic (Precursor) |
| trEMBL | tr|I1MNE2|I1MNE2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G25200.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 168104 | 171972 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005931.1 | PF12697.2 | Abhydrolase_6 | 83 | 337 | 1.90E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.775 |
| SRR1783600 | control | 1.824 |
| SRR1783602 | moderate drought stress | 1.170 |
| SRR1811619 | moderate drought stress | 1.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.068 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.697 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.624 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.525 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.489 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 110.943 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 110.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.935 |
| SRR2868004 | Drought Stress (root) | 3.834 |
| SRR2967015 | Control (root) | 3.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 129.817 |
| SRR9715740 | Leaf | 199.893 |
| SRR9715741 | Leaf | 84.531 |
| SRR9715739 | Root | 0.772 |
| SRR9715742 | Root | 1.058 |
| SRR9715743 | Root | 1.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.285 |
| SRR8749028 | MeJA induced 9h | 9.779 |
| SRR8749029 | MeJA induced 9h | 11.235 |
| SRR8749030 | Uninduced | 4.883 |
| SRR8749031 | Uninduced | 1.195 |
| SRR8749032 | Uninduced | 1.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.831 |
| SRR8400027 | Control - Root | 4.262 |