Gene detail

Gene detail information of Glyur000096s00005930.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18280.2	2.00E-82	tubby like protein 2
NR	XP_006574698.1	6.33E-169	PREDICTED: tubby-like F-box protein 5-like [Glycine max]
Swissprot	tr\|Q6Z2G9\|TLP5_ORYSJ	3.00E-100	Tubby-like F-box protein 5
trEMBL	tr\|I1JCN8\|I1JCN8_SOYBN	2.00E-169	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}

Sequence

Transcript Sequence

>Glyur000096s00005930.1
ATGTCGATGAAAAGCATAGTCCGTGAGCTCAAGGAAATGAGAGATGGAATAGGTATCATATCGAAACGGGGTGCTGAAAGTAGGAATTGGCTCGGTCGGACAAAGTCCCATGTTGCTCCAGATGTCCTTGTAGAACCTATTCAACAAGGACCGTGGGCAAATCTACCACCAGAATTGCTTTTGGACATAATCCGAAGGGTGGAAGAGAGTGAGACATCATGGCCAACAAGGGCTGTTGTTGTTTTTTGTGCTTTGCCGGGTCCTCATGATTCTCCAATACAGTGCTTTATTAGGAGGAGCAAAGAAACTTCAACATATCTATTGTACCTTGGTTTGGTGCCATGTCTAGTTTTCTGGGGACCAATATATGATAGTCAACCTCCACATGATGCTGCAATTCAACAAAATTGTCGATCAAGTAGGAGATTTAATTCTAAGCAGGTGTCACCAAGAGTTCCATCATGTAGCTATCTTGTTAGCACTGTGTCCTATGAGATGAATGTTCTCCACGGTAGGCCAAGAAGAATGCACTGCATCATGAACTCCATATCCGTCTCAACTATTTCAGAAGGGGGCAATATCCCAACTCGAACATCTTTGCCTCAAATATTTGATGAATCTTTTTCCCCTGCACCCGCACCGAAAGGAAAAGGTCTAGTGACAGATTTAAACTCTACCAACCTATCAGAGCTACCAGGATTGAGCAAAGGCTCAGTTGAGCCCTTGGTACTTAAAAACAAGGCTCCTAGATGGGACGAGCAGCGCGAGTGTTGGTGCCTAAGCTTCAAGGGTCGTGTTACAATGGGATCTGTTAAGAACTTTCAACTTGTATCCGCTGTTGATCCATCTCACGATATTTCCGATGAAGAGCAAGAAAGGGTAATCTTACAATTTGGAAAGATTGAAAAAGACGTATTTACCATGGATTACTGTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACAAGCTTTACTAACCAAGAAAAAAATCTACTTGACAGGCTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00096	164818	166486	-

Gene family

Gene family	subfamily
Transcription Factors Family	TUB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000096s00005930.1	PF01167.13	Tub	122	327	5.10E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.390
SRR1783600	control	0.567
SRR1783602	moderate drought stress	0.503
SRR1811619	moderate drought stress	0.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.616
DRR006520	Root Summer glycyrrhizin high producing strain	1.708
DRR006521	Root Winter glycyrrhizin high producing strain	0.468
DRR006522	Root Winter glycyrrhizin high producing strain	0.370
DRR006523	Root Summer glycyrrhizin low producing strain	0.920
DRR006524	Root Summer glycyrrhizin low producing strain	0.867
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.481
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.387

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.679
SRR2868004	Drought Stress (root)	0.285
SRR2967015	Control (root)	0.145

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.617
SRR9715740	Leaf	1.273
SRR9715741	Leaf	0.508
SRR9715739	Root	0.000
SRR9715742	Root	0.462
SRR9715743	Root	0.193

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.077
SRR8749028	MeJA induced 9h	0.137
SRR8749029	MeJA induced 9h	0.104
SRR8749030	Uninduced	0.179
SRR8749031	Uninduced	0.120
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.384
SRR8400027	Control - Root	0.534