Gene detail information of Glyur000096s00005929.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18280.2 | 2.00E-69 | tubby like protein 2 |
| NR | XP_010095256.1 | 4.47E-167 | Tubby-like F-box protein 5 [Morus notabilis] |
| Swissprot | tr|Q6Z2G9|TLP5_ORYSJ | 7.00E-91 | Tubby-like F-box protein 5 |
| trEMBL | tr|W9RLQ5|W9RLQ5_9ROSA | 2.00E-167 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 157284 | 162055 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005929.1 | PF00646.28 | F-box | 54 | 105 | 9.60E-09 |
| Glyur000096s00005929.1 | PF01167.13 | Tub | 266 | 482 | 2.50E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.426 |
| SRR1783600 | control | 24.778 |
| SRR1783602 | moderate drought stress | 25.512 |
| SRR1811619 | moderate drought stress | 25.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.056 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.503 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.304 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.021 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.228 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.850 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.972 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.309 |
| SRR2868004 | Drought Stress (root) | 35.849 |
| SRR2967015 | Control (root) | 34.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.373 |
| SRR9715740 | Leaf | 19.617 |
| SRR9715741 | Leaf | 20.396 |
| SRR9715739 | Root | 8.269 |
| SRR9715742 | Root | 15.220 |
| SRR9715743 | Root | 13.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 38.214 |
| SRR8749028 | MeJA induced 9h | 21.655 |
| SRR8749029 | MeJA induced 9h | 24.572 |
| SRR8749030 | Uninduced | 29.772 |
| SRR8749031 | Uninduced | 21.007 |
| SRR8749032 | Uninduced | 21.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.773 |
| SRR8400027 | Control - Root | 27.779 |