Gene detail

Gene detail information of Glyur000096s00005921.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09850.1	3.00E-97	Transcription elongation factor (TFIIS) family protein
NR	XP_007137683.1	0	hypothetical protein PHAVU_009G146900g [Phaseolus vulgaris]
Swissprot	tr\|F4KFC7\|MD26C_ARATH	3.00E-127	Probable mediator of RNA polymerase II transcription subunit 26c
trEMBL	tr\|V7AVL1\|V7AVL1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09677.1}

Sequence

Transcript Sequence

>Glyur000096s00005921.1
CAAAATCTGATCTATCTCTAAAAAGTCGTCTAAAGTGAATGCTGTTTTTGTCCGTTCATCTCCCTTAGCCCACATCAAACACCAAAAAAAAAAAAAACCAAACCAGCTTCGCACCAAACCACACACACCAAGTAGGGTGGGGGTATTGGTCACCGCTCACCACCNGCTACAGCCCTCACCCTTACCATACCAATACCACTCTCCATCCATCCACCCTTCAAATTAAACAAAAGCTAAAATAAAAAACAAATTTAAGAAAAGAAAAGAAAAAAATCAAAGGGTTTTTTTCTTGTCGAATATACTCTCTCATCATCATCTTTCACTATCCTATTCTCCAGCATCCACAACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTGCATCATCAATCGCAATTCCAAACCTTCTCAGATCTATGCCCTTTTTATTGCCATTACTATCTCGTCGTTTCGATCTACCGGTTGCCGTTTCAGTGTCTCACGACGCAGCACCACCACCACCTCGTTTCCGTTTAGATCCCGTGATGATGTAACAAGGAATCTTCCGAGATTCTTCTTCGTGCGTTTGTTAGCGTTTTTTTCTTCAGTTGAGAAAGGAGAGAAAAAAACAAAAACTCCTCAATCCTCATCTTCCTTCAACACTATATCAGAGTCTCCGATTGATCGGTCAACGCACGCGCTTCGATTATGGATTTGGACGATTTCCGATCCATATTGGAAACGGCGGGCGTCGACGTGTGGACGTTCATCGACACCGCAATCGACGTCGCTTCAATGGATTACGCCGGCGAACTGAGGCGCCGGCGAGACGGAATCGTCGAGCGACTCTACGCCTCGACGACGGCTCCTCCGCCGTGCCGGAATTGTGAAGGCGGCGATAATACACTCAGGCAAAACGGCAGCAACCAAATCAAAAAACAGAGCAGCCCTAGCCCAAGCCCCGAACGACAACGACAACCACAACAACAACAACGCCGCGGCGGCGCCTCCTCNCCCGCAACGCCGCAATCTCTCGAAAACGAGGAGGAGTTAGATCCTTACGGTGGATTGTTCGATGATGAACAGAAGAAGGTTCTAGAGATTAAGGAGCAACTAGAAGAACCTGACCAGTCTGAAGATTCGTTGGTGGAGTTGCTGCAAAATCTAGCGGACATGGATATCACATTCCAAGCGTTAAAGGAGACTGACATCGGGAGGCACGTGAATCTGTTGCGGAAGCATCCTTCCAATGACGTTCGGCGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCGCAGGGAGGAACCAACAACACTCTCATGGCTGATGGAGACTCACCAGTGCAGAAAACCACCCAAAATGGACATCATCATCAGATTCCTGATTTTGCGTACTCGCCAAATCCACATAACGGGAGCTCTGGGTCTGACCGCAACAACTCAGAAGCAGAACCAAAACCAAAAGCGATTCCCCGCAGAGAAGCTCCTCCAAAACCAACGCGATCACCACCAGTTACTACTACCCATCCTTCTGCTTCTCAAAACAGACAGAGAGAACAGAAAGAGAGCAATTTTGAAGCTGAGAGGCTTGCNTCGGCTAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGACATCCATGAGTTGCCAAAGTCAAAACCCAAGAATAATGGCTTTTTTGGAAAGCACAAAGGTGGAGGCAGTTCTCAGGGAAGGCACTGGTGATAACATGTTCCATTGTTATAGAAAAAAAAAAGCTGGTGGTGGCTTCGGATAAAAGTCGTAAACCGTGTTCACCCCTATGGATTTTCCTCCCGATGATGAACCTATTTTTATCTTGTGGTTTTTATTTACTTAAATTAATAATAACCGAAGAGAGAGGAAAAAAAACACTTCCTTTCTGAAAGGCCAAACCCGCTTTTGTCCTTTTGTTGAGGAGCACGTGATTTCAGGAATCCGGATAGGGATGGAATGGGAGTGTGGGGGTGAAAAAGGTTTTTCCTTAAAGATACAAAAACATGTTTTTTTTGGATTGAAGTAGATTGGGTTTAAAGGATGCCTTATTCCATTAAGGGCAGTTTAGCCTTTTTCTTAAACAAAAACAGCAAGAAGGTCAAGAATTGATCATATTTGACCCTTTAATTGGGGGCGCTGTCTGGGAAGCTTAGTTGCTGGCGCAATTAATAATGGGTTCTCCGGTCAATGCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00096	109591	112822	-

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000096s00005921.1	PF08711.6	Med26	148	199	3.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.366
SRR1783600	control	63.142
SRR1783602	moderate drought stress	74.841
SRR1811619	moderate drought stress	74.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.722
DRR006520	Root Summer glycyrrhizin high producing strain	64.064
DRR006521	Root Winter glycyrrhizin high producing strain	88.837
DRR006522	Root Winter glycyrrhizin high producing strain	86.287
DRR006523	Root Summer glycyrrhizin low producing strain	71.356
DRR006524	Root Summer glycyrrhizin low producing strain	70.490
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.600
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.567
SRR2868004	Drought Stress (root)	69.460
SRR2967015	Control (root)	74.597

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.198
SRR9715740	Leaf	40.277
SRR9715741	Leaf	52.876
SRR9715739	Root	22.328
SRR9715742	Root	63.917
SRR9715743	Root	52.417

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	111.965
SRR8749028	MeJA induced 9h	177.696
SRR8749029	MeJA induced 9h	151.269
SRR8749030	Uninduced	163.031
SRR8749031	Uninduced	115.592
SRR8749032	Uninduced	152.037

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.593
SRR8400027	Control - Root	76.007