Gene detail information of Glyur000096s00005919 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09840.1 | 4.00E-99 | Putative endonuclease or glycosyl hydrolase |
| NR | XP_004502893.1 | 0 | PREDICTED: uncharacterized protein LOC101500766 [Cicer arietinum] |
| trEMBL | tr|G7JAW3|G7JAW3_MEDTR | 0 | Endonuclease or glycosyl hydrolase {ECO:0000313|EMBL:AES72785.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 99804 | 104532 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005919.1 | PF01936.13 | NYN | 119 | 254 | 6.00E-27 |
| Glyur000096s00005919.1 | PF12872.2 | OST-HTH | 326 | 378 | 0.0013 |
| Glyur000096s00005919.1 | PF14418.1 | OHA | 752 | 806 | 1.30E-06 |
| Glyur000096s00005919.1 | PF12872.2 | OST-HTH | 875 | 928 | 0.00053 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.675 |
| SRR1783600 | control | 4.726 |
| SRR1783602 | moderate drought stress | 3.716 |
| SRR1811619 | moderate drought stress | 3.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.057 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.538 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.445 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.505 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.457 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.900 |
| SRR2868004 | Drought Stress (root) | 2.807 |
| SRR2967015 | Control (root) | 2.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.104 |
| SRR9715740 | Leaf | 2.056 |
| SRR9715741 | Leaf | 0.609 |
| SRR9715739 | Root | 0.599 |
| SRR9715742 | Root | 3.542 |
| SRR9715743 | Root | 3.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.882 |
| SRR8749028 | MeJA induced 9h | 5.260 |
| SRR8749029 | MeJA induced 9h | 1.775 |
| SRR8749030 | Uninduced | 1.078 |
| SRR8749031 | Uninduced | 1.178 |
| SRR8749032 | Uninduced | 0.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.779 |
| SRR8400027 | Control - Root | 4.200 |