Gene detail

Gene detail information of Glyur000096s00005913.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76890.2	9.00E-52	Duplicated homeodomain-like superfamily protein
NR	XP_007137690.1	1.47E-174	hypothetical protein PHAVU_009G147500g [Phaseolus vulgaris]
Swissprot	tr\|Q39117\|TGT2_ARATH	4.00E-105	Trihelix transcription factor GT-2
trEMBL	tr\|V7AVU4\|V7AVU4_PHAVU	6.00E-175	Uncharacterized protein {ECO:0000313\|EMBL:ESW09684.1}

Sequence

Transcript Sequence

>Glyur000096s00005913.1
CTTTCCTTGTAACTTTGTTTATTTAACCTGTGAATAATAATAATAAGAATAATGGTGTATGGTAGTAGGTAGAAGAAGTAGAACTAGCTAGAACTAGAATAGAACCAAGAGTACGAGCTCCTCTCAAATCGAAAACACACAATTCACAACCCAAATACATACCCGTTATCGAAATTACCTTTTCCTATTTTCAAATTTCACCGACGTTGTTTTGTTTTTTTCTTCTTCTTTTGCACCCCTTCACTCACACACAAGAGAGTTTTCTTTCTCAGCTGTAATTAATTCGGTGAAAACTGATGCTGGAAGTTCCAACTTTACCGGAAAATCCCATCGAGGAGANGCGGGAGGCAGGGGATTCCGGCGGTGGTGGCGTGGCGGTTTCCGATGGGTATAAAGCGGATTCGTCGTCGTCGAGCCGGTGGCCTCGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCCTTCAGAGATGCCAGCCCCAAAGCTCCTCTCTGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATCAAAGGAGCGCGAAGAAGTGCAGGGAGAAGTTTGAGAACATTTACAAGTACCATAGAAGGACCAAAGAAGGCCGTTGTGGCAAACCCAACAACAACGGCAAGACCTATCGATTTTTCGAGCAATTAGAAGCTTTACACCCACAANAACAATCTGCATCAGCTGCAACCGCCCCAACAACAACCCACAACGTTGATGACGTCATCCAAGATGCGGTTCCCTGTTCGGTTAGATTCCCCAGTAGTGCAGAAGACTCGTTGTTGGAATTGGAACATTCCGGAACTTCCTCTTCTTCTTCAGAGGAAAGCGAGGGGAAGGGAAAGAAGAACAAGAAGAGGAAGGTGAGGGAGTTTTTAGAGGGGCTTATGAGGGAAGTGATAGAGAGGCAAGAGAAGCTACAGAGGAAGCTGATGGAGGCACTGGAAAACTGCGAGAAGGAACGAATGGCTCGGGAAGAGGCTTGGAAGGTTGAAGAGCTGGCTCGGATCAAGAGGGAACGCGAACTTCTGGCTCGGGAAAGGTCAATATCCGCAGCTAAAGATGAAGCCGTGCTTGCCCTCTTGAAAAAGATCACCGAAAACGTGGTGGTGCAGTTCCCAGAACCAGAGTCAGAGAACAATATTCATCATCATCATCATCATCAGGTTCCAAATGAGAAGAAAGACAACAATAAGGGCATACAAGAAATTAATGGTAATAATGGGGAAGGAGAGAAGCGAGAATTAGGTGGGATTGGGAATTTGAATTTCAATATGCAAGTGGGTTCATCGAGATGGCCAAGGGATGAAGTGGAGGCTTTGATAAGGTTGAGAACAGAGATGGATGTTGTGCAGTCTAATAATAATAATAATAATAATTCTAATAAAGGACCACTTTGGGAGGAGATATCTTTGGCAATGAAGGGGCTTGGGTACGATCGAAGTGCCAAGAGGTGTAAGGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAATAGGAGGAAGCCCATGGATTCCAAAACATGTCCCTATTATCACCACCTTGAAGCCTTATACAGTAACAAAAAGCCTAAGAAAGCAGTGGATGGGTCGGTTTCGGCTGGTTCTGCAGGCAATATTAATGATTTAAAGCCTGAGGAGCTGTTGATGCATATTATGGAGAGTCAACAACAGGAGAGAGATCAGTGTTCATCTGAAGATGCTGAGAGAGAGAACATGGATCAGAACCAGCATCATCACCAGGGAGATGATAATGATAATAATGATGAAGATCAAGGTGGGTATGAACAGATGGTTGACAATAGTCCTTCCATACCAATCATGAGTTGATTTTGATGATTCTTTATTAGTAATTGAAATCAACTACTTCTTCTTGTGTGACAACCAACGTGGGGTTTCTTTCCCCTTAGAATACGAACCAATCTCATGTGTGGTGTTTTTTGTATGTATTATTACAGTTACATTATTACATACACTATCTTTAGTCTTCATCGGGGNTTTTTTGTTGAGTGAACATGGATATACACGGAAACAGAACACACGCACAGGGAAGANAGAGAGAGATTTGTCTTCTGTCTGTAAAAAGTAAAAGTCACTGCTGGGGCGTGTAATAGTATAAAGTATTCCCTAGAAGTTTGTAAACCCATGTGTGATCAGGTGGGAAATGGTTGGATTTGTTTGTTTCTTTGTGATAAATAAAGAATGGCATAGTGGTGAAATGAAAAGTGTGTGTGTGTGTGTGTTTTTTTTTTTGCTTTTGTTTAAACTTTAAAGTGGCTGAATGGATTATTACGCCACGCGTGGGCATAGCAGTTGGCTATCATTGTGGATGGATGGATGTGCATCATTGCTCTCTCTTGCTTCTCACCAAAACTTGTGCTTAGGTTCACCTTTTTTATTTGGGTGAATGTAATCACTGAGGCATTATTGGCTTAATAGAAAGTTTAATCTTCCCTATCTAATTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00096	69715	72536	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000096s00005913.1	PF13837.1	Myb_DNA-bind_4	40	128	5.70E-19
Glyur000096s00005913.1	PF13837.1	Myb_DNA-bind_4	339	431	1.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.707
SRR1783600	control	9.690
SRR1783602	moderate drought stress	17.291
SRR1811619	moderate drought stress	17.154

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.319
DRR006520	Root Summer glycyrrhizin high producing strain	10.175
DRR006521	Root Winter glycyrrhizin high producing strain	150.706
DRR006522	Root Winter glycyrrhizin high producing strain	146.613
DRR006523	Root Summer glycyrrhizin low producing strain	30.341
DRR006524	Root Summer glycyrrhizin low producing strain	30.078
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.119
SRR2868004	Drought Stress (root)	29.823
SRR2967015	Control (root)	35.447

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.118
SRR9715740	Leaf	17.162
SRR9715741	Leaf	21.637
SRR9715739	Root	3.097
SRR9715742	Root	21.001
SRR9715743	Root	16.307

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	113.990
SRR8749028	MeJA induced 9h	321.329
SRR8749029	MeJA induced 9h	246.015
SRR8749030	Uninduced	169.923
SRR8749031	Uninduced	208.779
SRR8749032	Uninduced	104.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.047
SRR8400027	Control - Root	17.708