Gene detail

Gene detail information of Glyur000096s00005908

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64040.1	1.00E-56	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
NR	KHG23422.1	5.14E-90	Photosystem I reaction center subunit N, chloroplastic -like protein [Gossypium arboreum]
Swissprot	tr\|P49107\|PSAN_ARATH	5.00E-85	Photosystem I reaction center subunit N, chloroplastic (Precursor)
trEMBL	tr\|G7JAX6\|G7JAX6_MEDTR	8.00E-89	Uncharacterized protein {ECO:0000313\|EMBL:AFK34346.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00096	45028	46027	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009522 photosystem I

GO:0042651 thylakoid membrane

molecular_function
GO:0005516 calmodulin binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000096s00005908.1	PF05479.6	PsaN	41	174	1.20E-66

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.050
SRR1783600	control	0.050
SRR1783602	moderate drought stress	0.314
SRR1811619	moderate drought stress	0.318

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.294
DRR006520	Root Summer glycyrrhizin high producing strain	0.292
DRR006521	Root Winter glycyrrhizin high producing strain	0.151
DRR006522	Root Winter glycyrrhizin high producing strain	0.147
DRR006523	Root Summer glycyrrhizin low producing strain	0.149
DRR006524	Root Summer glycyrrhizin low producing strain	0.149
DRR006525	Leaf Summer glycyrrhizin high producing strain	400.746
DRR006526	Leaf Summer glycyrrhizin high producing strain	399.714

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.064
SRR2868004	Drought Stress (root)	2.348
SRR2967015	Control (root)	3.665

SRA Experiment	Description	TPM
SRR9715738	Leaf	419.151
SRR9715740	Leaf	360.578
SRR9715741	Leaf	312.210
SRR9715739	Root	0.033
SRR9715742	Root	0.377
SRR9715743	Root	0.366

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.078

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.206
SRR8400027	Control - Root	0.275