Gene detail information of Glyur000096s00005899 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39590.1 | 0 | TLD-domain containing nucleolar protein |
| NR | XP_003523238.1 | 0 | PREDICTED: uncharacterized protein LOC100786867 [Glycine max] |
| trEMBL | tr|I1JY44|I1JY44_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G39340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00096 | 23754 | 29065 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000096s00005899.1 | PF07534.11 | TLD | 337 | 504 | 6.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.513 |
| SRR1783600 | control | 10.632 |
| SRR1783602 | moderate drought stress | 17.193 |
| SRR1811619 | moderate drought stress | 17.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.937 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.628 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.747 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.235 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.282 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.215 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.306 |
| SRR2868004 | Drought Stress (root) | 28.236 |
| SRR2967015 | Control (root) | 35.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.666 |
| SRR9715740 | Leaf | 16.301 |
| SRR9715741 | Leaf | 13.997 |
| SRR9715739 | Root | 6.495 |
| SRR9715742 | Root | 16.514 |
| SRR9715743 | Root | 13.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.644 |
| SRR8749028 | MeJA induced 9h | 22.259 |
| SRR8749029 | MeJA induced 9h | 9.550 |
| SRR8749030 | Uninduced | 8.374 |
| SRR8749031 | Uninduced | 7.027 |
| SRR8749032 | Uninduced | 6.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.954 |
| SRR8400027 | Control - Root | 25.137 |