Gene detail

Gene detail information of Glyur000095s00007070

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03010.1	1.00E-156	RNI-like superfamily protein
NR	XP_004496056.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL1-like [Cicer arietinum]
COG	YP_001192956.1	1.00E-29	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q00874\|DR100_ARATH	4.00E-39	DNA-damage-repair/toleration protein DRT100 (Precursor)
trEMBL	tr\|K7LGZ7\|K7LGZ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G02810.2}

Sequence

Transcript Sequence

>Glyur000095s00007070.1
ATGGCGAAGCGCGTGATCGGTTCGTATCCTCTGTTTTTCTTCTGCCTGATACACACTGTGCTCGCCATACTGGACCCAACTGATTTCCTGGCTCTGCAATCGATTCGTAAGGCTCTCGAAGACATGCCGGGTTCTGATTTCTTCGCTTCATGGGATTTCACCGCCGACCCTTGCAACTTCGCCGGAGTTTACTGCGATTCCGATAAGGTCATTGCCCTCAACCTCGGCGATCCCAAGGCCGGTTCCACCGGTCTAACCGGCCGGCTCGACCCGGCCATCGGAAAGCTCTCTNCTCTCGCCGAGTTCACCGTTGTCCCGGGAAGGATATACGGTCCCCTTCCTGAAACCCTCTCCAATTTGAAGAACCTCAGGTTCCTCGGCGTCAACCGGAACTTCATCTCCGGCGAGATTCCGGCGGGGTTGGGCGGGTTGCGCAGCCTCCGAACCATCGATCTCAGCTACAACCAGCTCACCGGACGCATTCCTCCCACCGTCGGGTCCCTACCGGAGCTGACCAACCTGATCCTCTGCCACAACCATCTCTGGGGTTCGGTTCCCCGGTTCGAGTCGCAGAGTCTGAGCCGGCTAGACCTCAAGCACAACGCTCTCTCCGGTTCGCTTGCTACGAACTCTCTCCCTCCGTCTCTCCAGTACCTCTCCCTGTCGTGGAACAAACTCACTGGGCCCATGGACCGGCTCCTGGCCCGTCTCGACCAGCTTAACTATCTGGACCTAAGCCTGAACCAGTTCACGGGCCCAATCCCGGGCCGGATCTTCTCATTCCCACTGAGCAATATCCAATTAGAAAGGAACCAGTTCTCGGGACCAGTCGAACCGGTTGATCAGGTGACAGTCCCAACCGTTGATCTCAGCTACAACCGGTTGTCCGGTCAAATATCGCCAATGCTTGCAAGCGTGCAGAACCTGTACCTGAACAATAACCGGTTCACGGGTCGGGTACCGGCAAGCTTCGTGGACCGGTTGCTGGACGCGAGCATACAGATACTGTATCTGCAGCACAATTATCTGACGGGGATTGAGATAAGCCCAACGGCGGTTATTCCGGAGAGAAGCTCGCTGTGTCTGCAGTATAATTGCATGGTCNCGCCCGTAGAGACGCCCTGCCCCTTGAGGGCTGGTAACCAGAAATCAAGGCCTACAGCACAGTGCAACCAGTGGAAGGGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	343202	344389	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007070.1	PF08263.7	LRRNT_2	26	66	5.80E-09
Glyur000095s00007070.1	PF12799.2	LRR_4	146	182	3.50E-07
Glyur000095s00007070.1	PF13504.1	LRR_7	214	227	0.82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.568
SRR1783600	control	7.730
SRR1783602	moderate drought stress	6.261
SRR1811619	moderate drought stress	6.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.638
DRR006520	Root Summer glycyrrhizin high producing strain	10.330
DRR006521	Root Winter glycyrrhizin high producing strain	1.056
DRR006522	Root Winter glycyrrhizin high producing strain	0.917
DRR006523	Root Summer glycyrrhizin low producing strain	9.474
DRR006524	Root Summer glycyrrhizin low producing strain	9.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.901
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.799

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.423
SRR2868004	Drought Stress (root)	25.354
SRR2967015	Control (root)	29.616

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.787
SRR9715740	Leaf	5.896
SRR9715741	Leaf	4.477
SRR9715739	Root	14.494
SRR9715742	Root	15.178
SRR9715743	Root	14.559

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.507
SRR8749028	MeJA induced 9h	11.745
SRR8749029	MeJA induced 9h	6.396
SRR8749030	Uninduced	2.046
SRR8749031	Uninduced	0.212
SRR8749032	Uninduced	1.376

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.351
SRR8400027	Control - Root	18.624