Gene detail

Gene detail information of Glyur000095s00007067

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G03380.1	homolog of yeast autophagy 18 (ATG18) G
NR	KEH43273.1	breast carcinoma amplified sequence 3 protein [Medicago truncatula]
Swissprot	tr\|Q8GUL1\|AT18G_ARATH	Autophagy-related protein 18g
trEMBL	tr\|A0A072VPC8\|A0A072VPC8_MEDTR	Breast carcinoma amplified sequence 3 protein {ECO:0000313\|EMBL:KEH43273.1}

Sequence

Transcript Sequence

>Glyur000095s00007067.1
TGGGAAGACCGGAAGATTGATTGCAGAAGTGAAGNAAAGGAAAAACAGTAAATAGAAGAAACTTGCAGGAGGAGGAGGAGGCGGAGTAGTGTAACAGTCACCGGCAACGATGGACGATAGAGAAAGCGAAACCAAAGTCCGCAGTAGTACTCAACTCTGAGTCTGCCACCGCGACGCTGTTAGCAAACTCAAACACTCTCAAAGCGTCTGCGATGGTGATTGCAATCCGAAACGTTTTTTCTTTTTTTCCTTTGTTTCTCTTTTTGTTGCCGACGNGTGGTTGTGGTTGTCGGTGGGAAGAGTAGTAGTTGAAGGATAATAATATTATTATAATAATAATCAACACGATGAAGAAAGGGAAGGGGAAGAACAACGGCTTGTTGCCGAGTTCGTTGAGGATCATCTCTTCCTGCCTTAAGACCGTCTCCACCAATGCCAGCACCGTCGCTTCCACCGTCCGCTCCGCCGGTGCCTCCGTCGCCGCTTCCATTTCCTCTGCCTCCGATGATCACAAAGNTCAGGTTACCTGGGCTGGTTTCGATGTACTAGAGCTTGATCAGTCTATCTTTAAACGTGTTCTTTTACTTGGTTATCTGAACGGATTTCAAGTACTTGATGTGGAGGATGCCTCTGGCTTTAGTGAGCTGGTCTCAAAGCGNGACGGGCCAGTTTCTTTCTTACAGATGCAGCCTTTCCCTGTAGGTTCTGATGACTGCCAGGAGGGATTCAGAAAATCTCATCCATTGCTCCTGGTTGTTGCCGGGGATGACGCTGGCGGTGTTAGCCAAAACAGTAACCATTTGGGTAGTTTAGGACGAGATGGTAAGGTAGAGACTCAATCTGGGAATGGTGTCAACTCTGCAACAGCTGTTCNGTTTTACTCCTTGAAGTCTCACTGTTATGTTCATGTTCTGAGATTTCGATCCATGGTGTGTATGATCAGATGCAGTTCAAAGATAGTAGCTGTTGGTCTTGCCACACAAATATACTGCTTCGATGCATTGACTCTTGAGAATAAATTCAGTGTTCTCACTTATCCTGTTCCTCAGTTAGCGGGACAAGGAACAATGGGAGTTAATGTGGGTTATGGTCCAATGGCTGTGGGTNCAAGGTGGCTAGCATATGCTTCCAACAACCCGCTGCCCTCAAATGTAGGATGCATAAGCCCACAAAACCTAAGTNCGTCTCCAGGAGTTAGTCCATCAACATCTCCGAGCAGTGGTAGTTTGGTGGCTCGCTATGCAATGGAGTCCAGTAAACATTTGGCTGCTGGAATAATCAAATACTGTCANGAGTTGCTTCCTGATGGTTCTAGTTCTCCAGTACCATCAAATTCTGGCTGGAAAGTTAGTAGGGTTACAGGAAATGATGTGGATAATGCAGGAACGGTAATTATTAAGGATTTTGCTTCCAGAGCTATCATCTCACAATTTAAAGCTCACTCTAGTCCTATATCTGCTCTATGTTTTGACCCTAGTGGGACACTTCTGATGATCCAGGACATTTGTTTTAGTCATTTTAGTCAGTGGATTGCAATTATCTCATCCAAGGGCACTTGCCATCTTTTTGTATTGTCACCTTTTGGAGGTGATACTGGTTTCCAAATTATCAGTTCTCAGGGTGAAGAGCCCTCCTTACTTCCAGTTTTGTCTCTACCTTGGTGGTCTACTTCTTCCATTTCTTATCCGCAATCTTTGCCTCCCCCAGCGCCTGTTGTCCTTTCTGTGGTTAGCCGGATAAAGTATAGCAGTTTTGGATGGCTTAATACCGTTCACAATTCTACTGCAAACGTGACAGGAAAAGTTTTTGTGCCATCTGGTGCAATTGCTGCGATATTTCATAATTCCTTATCCCACTCGCAGCAGCTTGTTAAATCAAAAACGAAATCCTTAGAGCATCTGTTAGTATATACACCATCAGGTCATATAGTTCAACATGAGCTTCTGCCATCTGTTGGTCCAGAACCAAATGAAAGTTGTTCGAGAACCCAGTCAACTTCAATCCCACATATGCAGGAGGATGAGTTTAGAGTGAAAGTTGAGCCTATTCAATGGTGGGATGTATGTAGAAGGACAGAATGGCCAGAAAGAGGGGATCCTCATGGCAATACCTTTGACAGACAAGATGGTATTGATAGAGTCCAAGAGAAAATATATTCTGGTGATGGCTATGGATTGAATTTTTTCAATATAAGTGATAGTGTGGGGGAAAAGGCAGTAAAATCTTCNCAAGGAAAGCCTCAAGAGAGATTTCACTGGTATCTGTCTAATGCAGAGGTGCAAGTAAATTTTGGAAGGATGCCAATATGGCAAAATTCAAAGATTTGNTTCTACTCAATGAATTCTGTGAAAACTATTTTTAGTTCTGGTGGAGAGTCTGAAATTGAAAATATCTCTGCCAATGAAGTTGAAATAAGACGGAAGGAGCTGTTGCCTGTTTTTGACCATTTTCATAGCATCAGACCAAGTTGGAATGAGAGAGGCCTTTCAGGGGAAAAATATTTGGGCCCTGCATCTCCAGTTCCCCATGGGGCTGAAGACAAGCAAACAGCTGACATGACAGTTATTTGCCACTCAAAACCGGCATCACTGAGCTCCACTGAGAGCTCGGATGGAGGTTCATCAAGAAGGATTGAAAATTTGCTTGACCTGGATCAAGTTTCTTCTTCTTGTCAAATGCTTGGTGAGATCTACCTGGAAAGAATGGAGGCAGTCAATGCTGAGCCTTCCCTGCAAAACAAGATTGTGCTTGAAAATTCATGTCTATCTGGAAACTTGAAGCATGTTGATTCTCCATATGACCATTGTCTCCATGGTAGTCCATTATTGCATGGGAGAAAGACAACCTCTGAGGGAAGAGGTACTGTAGAAGATGTTCAGATTAGTGAGAACTCAGCATTGGTCCTGAAACAACATGATTTAGATAAGAGCAAACTTGTTGAAGTTGCCTCCGTAATGCAAAATGCATGTGTCACCCATTCTTTCCCGGATGGTCACTGCAAGGCTCTGGTGCATGATGGAAGTAATGTGTTAACTGAGGTGGTAACCGATGATGTTGACAGCAGCAGCAGCCACCATGAAAGAGAGCAGCCAGAGGATGGGGAGAATGATGAAATACTTGGTGGCTTGTTTGCCTTTTCTGAGTAAGGTTGATTATCGCAATGTAAATGGATGTCACGGAATCAATGGAATCATCTTCTCATCATCCGTTCTCGCTGAAGTCTCACTCAGTTAAGAAAATGTAAAAAAGCAATGTGCACACGTTGTGAATAAGAAATGGACACACGAGCTACAATCAGGTTGATTTGTTGCTCGATTGTGTGATCTACCTCCCTGTCTCTTACCTTGTACATGCTGTAGATGGGAATCCAAATATTCGTGGGTTTGCTAATGTTGGGAGCTATCAAGTATTTGTGGGTTTGCATTCAGTCCTAAGCTGAACTTTTATCAAGCTTGCGTGTAAATATGAATTGGGCATGGAATTTGTATATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	323195	329335	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007067.1	PF12490.3	BCAS3	453	696	2.30E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.222
SRR1783600	control	11.353
SRR1783602	moderate drought stress	20.433
SRR1811619	moderate drought stress	20.516

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.164
DRR006520	Root Summer glycyrrhizin high producing strain	15.945
DRR006521	Root Winter glycyrrhizin high producing strain	19.731
DRR006522	Root Winter glycyrrhizin high producing strain	19.129
DRR006523	Root Summer glycyrrhizin low producing strain	15.528
DRR006524	Root Summer glycyrrhizin low producing strain	15.440
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.832

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.871
SRR2868004	Drought Stress (root)	18.991
SRR2967015	Control (root)	23.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.268
SRR9715740	Leaf	5.282
SRR9715741	Leaf	4.882
SRR9715739	Root	5.369
SRR9715742	Root	13.805
SRR9715743	Root	10.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.309
SRR8749028	MeJA induced 9h	10.974
SRR8749029	MeJA induced 9h	3.188
SRR8749030	Uninduced	3.661
SRR8749031	Uninduced	2.622
SRR8749032	Uninduced	3.674

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.522
SRR8400027	Control - Root	20.441