Gene detail

Gene detail information of Glyur000095s00007064

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G48030.1	1.00E-128	DNAse I-like superfamily protein
NR	KEH43280.1	0	endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
COG	YP_005443664.1	9.00E-18	hypothetical protein CLDAP_37270 [Caldilinea aerophila DSM 14535 = NBRC 104270]
trEMBL	tr\|A0A072VYY9\|A0A072VYY9_MEDTR	0	Endonuclease/exonuclease/phosphatase family protein {ECO:0000313\|EMBL:KEH43280.1}

Sequence

Transcript Sequence

>Glyur000095s00007064.1
ATGCTCAAGCTCATCAACAAGAACCTCCGCCGCTTCCTCTCCCATCTCCGGTGGCCAATTCGCCGCCGGTCAAAGGCCAAAGTAGTAGTGGTCAACAAATTGGGGAAGCATGACCCAGATGCCAAGCACGAATCAAGCACGAATCTTTCCGCTGCGGTTCACCCCAACGCTCAATTGGGTATCCCGAAACCCGAGAAGCCGATTCGGGTCGCGACCTTCAACGCTGCCCTGTTCTCCATGGCACCGGCACTTCCCAAAGCAGCAACATTTGACGACGAAAACGGCGTCGCTTCGAAACCCGGAAGACCCTTCGACCTCAATTCACGGTCGAAATCCACCAACGACCGTCCCAAAAGCATACTGAAGCAATCCCAATCACAGTTACGATCTTCGCTGAATTCCAATTCCGTGAAGGGACAAGAGAAAGACAACATCGTAATCAGCAAGCAGCAACAGAGGTTGTCGAAATCGAAAACGAGGGTTTCCATCAACCTACCGGACAACGAGATATCGCTGTTGAGAAGCCGACAATCGAGCTTCTCGGAACACGACAAGGAAGGGGTGGCATCATCAGCGAGTTTTTCGGGAAGTGGTGGTGGGGTCCACAACAGGAGTGGGAGAACGTTGGTGGAGGTTTTGAGAGAGGTGGATGCNGATGTTTTGGGGTTGCAAGATGTGAAGGCAGAGGAAGAGAATGGGATGAAGCCTTTGTCGGATTTGGCGGCGGCGCTGGGAATGAACTATGTTTTCGCTGAAAGCTGGGCACCCGAATACGGCAACGCTGTCTTGTCCAANTGGCCCATCAAACGCTGGAATGCTCACAAAATCTTTGATCACTCTGATTTCAGCAACAAGGGTGAATGTGACATGCAAAAAATTGTAATTGGCCACAGGAATGTTCTGAAGGCAACTATAGACGTACCCCAAGCAGGTGAACTCAACTTCTATTGTACACACCTTGATCATCTTGATGAGAATTGGAGGATGAAGCAGATAAATGCAATAATCCAATCCAATGATGAGCCTCACATCTTAGCTGGAGGACTTAATTCACTCGAAGAATCGGATTACTCCCAAGAAAGATGGACAGATATTGTAAAGTACTATGAAGAGATGGGAAAGCCAACACCAAAGGTTGAAGTGATGAAATATCTCAAGAGTAAAGACTACACGGATGCTAAGGACTATGCAGGGGAATACGAGTCAGTTGTAATGATTGCCAAGGGCCAAAGTGTTCAAGGGACATGCAAGTATGGAACTAGAGTAGACTACATATTATCATCATCAAATTCTCCATATAAGTTTGTTCCAGGTTCCTATTTAGTCCTTTCTTCCAAAGGGACATCAGATCATCACATAGTGAAAGTTGATGTGGTGAAGGTAGACAACAGTTCTCAAGAAAACGCAACAAAGAAACCGCAACAGCAACAACCAAAACAGAAAATTGTAAGAATAACACATTCGACTCCGTCGAAAGGTATCTGGAAAACACACAATGGAGAGATATATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	301839	305456	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007064.1	PF03372.18	Exo_endo_phos	207	451	2.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.451
SRR1783600	control	2.326
SRR1783602	moderate drought stress	3.714
SRR1811619	moderate drought stress	3.697

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.742
DRR006520	Root Summer glycyrrhizin high producing strain	6.663
DRR006521	Root Winter glycyrrhizin high producing strain	0.590
DRR006522	Root Winter glycyrrhizin high producing strain	0.638
DRR006523	Root Summer glycyrrhizin low producing strain	7.563
DRR006524	Root Summer glycyrrhizin low producing strain	7.378
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.991
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.230
SRR2868004	Drought Stress (root)	28.521
SRR2967015	Control (root)	23.209

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.960
SRR9715740	Leaf	7.168
SRR9715741	Leaf	8.327
SRR9715739	Root	0.404
SRR9715742	Root	4.604
SRR9715743	Root	3.011

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.439
SRR8749028	MeJA induced 9h	31.161
SRR8749029	MeJA induced 9h	11.724
SRR8749030	Uninduced	17.243
SRR8749031	Uninduced	4.092
SRR8749032	Uninduced	3.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.027
SRR8400027	Control - Root	6.935