Gene detail information of Glyur000095s00007060 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02980.1 | 3.00E-73 | endoplasmic reticulum auxin binding protein 1 |
| NR | XP_003518935.1 | 4.12E-120 | PREDICTED: auxin-binding protein T85-like [Glycine max] |
| COG | YP_001021604.1 | 5.00E-10 | hypothetical protein Mpe_A2414 [Methylibium petroleiphilum PM1] |
| Swissprot | tr|P33490|ABP1_TOBAC | 3.00E-97 | Auxin-binding protein T85 (Precursor) |
| trEMBL | tr|K7K8F7|K7K8F7_SOYBN | 2.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G16890.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00095 | 255912 | 259977 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000095s00007060.1 | PF02041.11 | Auxin_BP | 31 | 194 | 2.70E-99 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.990 |
| SRR1783600 | control | 11.238 |
| SRR1783602 | moderate drought stress | 16.175 |
| SRR1811619 | moderate drought stress | 16.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.590 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.425 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.607 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.996 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.389 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.439 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.298 |
| SRR2868004 | Drought Stress (root) | 6.411 |
| SRR2967015 | Control (root) | 6.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.563 |
| SRR9715740 | Leaf | 3.814 |
| SRR9715741 | Leaf | 2.408 |
| SRR9715739 | Root | 0.498 |
| SRR9715742 | Root | 2.126 |
| SRR9715743 | Root | 1.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.605 |
| SRR8749028 | MeJA induced 9h | 32.984 |
| SRR8749029 | MeJA induced 9h | 26.261 |
| SRR8749030 | Uninduced | 9.973 |
| SRR8749031 | Uninduced | 2.763 |
| SRR8749032 | Uninduced | 1.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.195 |
| SRR8400027 | Control - Root | 9.932 |