Gene detail information of Glyur000095s00007056 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G02940.1 | 2.00E-150 | oxidoreductase, 2OG-Fe(II) oxygenase family protein |
| NR | XP_003591621.1 | 0 | hypothetical protein MTR_1g089860 [Medicago truncatula] |
| trEMBL | tr|A0A072VPE6|A0A072VPE6_MEDTR | 0 | 2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313|EMBL:KEH43288.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00095 | 242342 | 248643 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000095s00007056.1 | PF13532.1 | 2OG-FeII_Oxy_2 | 285 | 406 | 1.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.477 |
| SRR1783600 | control | 4.529 |
| SRR1783602 | moderate drought stress | 5.689 |
| SRR1811619 | moderate drought stress | 5.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.038 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.088 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.398 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.880 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.725 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.252 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.073 |
| SRR2868004 | Drought Stress (root) | 20.977 |
| SRR2967015 | Control (root) | 14.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.125 |
| SRR9715740 | Leaf | 22.282 |
| SRR9715741 | Leaf | 24.650 |
| SRR9715739 | Root | 3.955 |
| SRR9715742 | Root | 13.269 |
| SRR9715743 | Root | 11.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.683 |
| SRR8749028 | MeJA induced 9h | 7.923 |
| SRR8749029 | MeJA induced 9h | 8.830 |
| SRR8749030 | Uninduced | 28.034 |
| SRR8749031 | Uninduced | 12.382 |
| SRR8749032 | Uninduced | 7.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.866 |
| SRR8400027 | Control - Root | 12.358 |