Gene detail information of Glyur000095s00007053 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63900.1 | 7.00E-121 | E3 Ubiquitin ligase family protein |
| NR | XP_004496072.1 | 0 | PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-like [Cicer arietinum] |
| trEMBL | tr|I1L813|I1L813_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G02920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00095 | 223285 | 228345 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000095s00007053.1 | PF12483.3 | GIDE | 86 | 235 | 1.30E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.618 |
| SRR1783600 | control | 6.407 |
| SRR1783602 | moderate drought stress | 7.532 |
| SRR1811619 | moderate drought stress | 7.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.385 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.435 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.409 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.171 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.814 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.417 |
| SRR2868004 | Drought Stress (root) | 22.594 |
| SRR2967015 | Control (root) | 23.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 42.697 |
| SRR9715740 | Leaf | 43.385 |
| SRR9715741 | Leaf | 42.662 |
| SRR9715739 | Root | 6.493 |
| SRR9715742 | Root | 16.197 |
| SRR9715743 | Root | 14.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.856 |
| SRR8749028 | MeJA induced 9h | 12.556 |
| SRR8749029 | MeJA induced 9h | 12.994 |
| SRR8749030 | Uninduced | 10.148 |
| SRR8749031 | Uninduced | 11.073 |
| SRR8749032 | Uninduced | 10.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.218 |
| SRR8400027 | Control - Root | 19.128 |