Gene detail

Gene detail information of Glyur000095s00007049

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50930.1	2.00E-98	cytochrome BC1 synthesis
NR	XP_007156079.1	6.02E-153	hypothetical protein PHAVU_003G256600g [Phaseolus vulgaris]
COG	YP_007098995.1	1.00E-29	AAA+ family ATPase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9SZD4\|PRS4A_ARATH	5.00E-12	26S proteasome regulatory subunit 4 homolog A
trEMBL	tr\|V7CFE5\|V7CFE5_PHAVU	2.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:ESW28073.1}

Sequence

Transcript Sequence

>Glyur000095s00007049.1
GCAGCTGCTAACAAGGCACCTAGAAAGCAAGGTAAATAAAAGCATAAAGACAAAACNAAGACTATACAAAAGCATAAGACAAAACTAAGACTATGCCTATTCCACATACTCCAGCAACTTCCAAGACAAAACATATCCANTCCCAAGGCACACAAGGNCGGAACCCACCACCTCCAAAGGCCNAGCAAAGCAAGAATAAACACAGAGAAAAACTCCATTGAAAAAAACTCTNGACACACCAAGCCTCAGAAATTCAGCAGGTAGTCATGAAAAGTGCAAGGCAACCAAAAGAATCCCAAGGGAACTTGCTAGATTATGTTAGCCAAGAAGGCCAAGCATAANATCAAAAACCCAACTTAATACCACGAGGGAGCCACCACTCCACCCAGCACAAATTCGGCCAGCCAGCTCTCAGCAGATCCAAAGGAAAAACTAACCAGTGAACCACACAACCTGATAGAACCAGAAAAAACAAACAGTACCAAGAAACCGCAGTCCATACAGCAAAGCAAAAAAACAGATGTCAACAACCATANAGCATCAGGTAAGTCACATCTCCTTGCATATATTTTTTGGTCATCCATAGTAGACCATCAAGCAACAAGCAATACTCCATATCTTTCCAAAACCAAGTTCCTGCAAAACANAAAAANAAGAAGTTAGTACTCCCAACCCCCTNTTTATCCCTCTCTTGAAACTAAAAAGGAGCTCCAATACACTCTTCTCACAAANTGTTTCCCAAACCCTCTGTTTANCCCTCTCTTGAGACTTAAAATGAGCCCCAATCACTCANCTCACAAACAATATCCAACCCCACACCAACCGCAGTCCATACAGCAAAGCAAAAAAAACAGATGTCAACAGCCATAAAGCATCANGTAAGTCACATCTCCTTGTATATATTTTTTTGGTCATCCATAGTAGACCATCAAGCAACAANCAATACTCCATATCTTTCCAAAACCAAGTTCCTGCAAAACAGAAAAANGAGAAGTTAGTACTCCNAACCCCCTGTTTATCCCTCTCTAGAAACTAAAAANGGAGCTCCAATACACTCTTCTCANAAANTGTTTCCCAAACCCTCTGTTTACCCCTCTCTTGAGANTTAAAATGAGCCCCAATCACTCANCTCACAAACAGTATCCAACCCCACACCAACTCCTCACTTTTACTGTTTAAGGGCCTAGCCCAAGTATCCAGTACACCGAGAAGCTAGAAATCNAAGAAACAAACACATATCCTCTGCACATTAATGAAAAGCTAGTCCAAGGATCAAAACAGCGCAGCTGAACCAGTAAAAAAACCAGCAAAAAAAACACAGTAACAGCCAAGACTATGAGCACCCATCCAAGACAACACACTCGGCTCCAACCAAAGAAATGATGGAATCCAGAGTCAAAAAACCGAGTTAAAACTACAGAAAAAAACTCCAACAAACCAAAACTTCAAGAGCCAAAAAAACACCATCAGGAGCCGAAGACAAGGTCANAAAAACAGTCCATGGATGTTGCTAAAAAAAGGAAAAGATCCCAAAGGGAGAAGAGAAAAAAAAATAACCAGAAAAAAAAAAAGCCACAAGAGAGCTAGTTGAAACAAGGAAGCAAAGGAAAACAGAACCCAGAAGCACCAACCAACCATATCCACAAACAAAACTCTAGCTAATATGGCATGTAAACACNACACAAAACAAAAAAGAACTACCCAAGCACGAAGCCAAAACTTCAGGTAAGTCCATACCAATACCTCACAACATCCTTCCACTTCTTTTNTACTATCTCAAGTACTAAAATCTCTATCTCTGTTTAGAAGAAGCTGTAAAGAATCTGGATGATTCCACCNCCAGTGTAGAGGAAGATTTCCTTGCATATTTAGGAGGGCGATTTGGTGGGCAACTTTGTTTCCTCCCCTTGCAACCCAGGTAACTGCGGCTGCTTCACGAAGGGCCAAAGCTTCTGCAATTAANGGAGAGGAAGCTGCAAAACATTTGGAACCAAATACCAGGCAAAGCAATTTAAAGGGGAGCAGCAGTGTGATTTTCTTTTTGAAAGGACAGGGGCAGCAGTGTGATTAATGCACACAGCTTTGGCATGACAATGAGCGAGTGAATCGACACACACACACAGACACACTGAAACCTCTCACTCACTTCCACTACCACGGTTCCGAAGGCAGCAAAACGAAGACCTTTTTCAATTCCTTTCTCCACCCTTTTCCTCAATATGTTTCTGTGAGTTCTGGTTTTTTCCTTCACAGTACTCTCAAGCACCTCATAAACCAAANTAAAAAAAAATGTCGTTTTTTCCCTCCTCCTCCTCNTCGTCGTCGGAGACCCACCCGGCGACGGCGAAGACGGTTCTCTCAGCGGCGGCCTCCGTGGCCGCAACCGCAATGGTGGTCCGGTCGGTGGCGAACCAGTTCCTCCCGCCGGAGCTAATGGCCTACCTTTGTAGCGGAATCCGCAGCGTGTTCACCCGCTTCTTCTTCTCCTCCTCTTCAGACGTAACAATGGTGATCGAAGAGTTCGAGGGCCTCGTAAACAACCAAATCTACGAGGCCGCAGAGGCCTACCTCGGCACNAAGATCACCCCCTCCACCAACAGGCTCCGAGTCAGCAAATCCGACACGGAGAATTCCTTCACCCTCACCATGGAGCGCAACGAGTCCGTAANGGACGTNTTCAACGGCGTCAAACTCCACTGGCCACTGGGTCCTCGTCTCCGGCCACGTGGATGATTCCAGAAGCTTCGAGAACCCGCGTGACTTGAACTCCACCCTGAAATCGNAGGTTCGGTNACTGGAGCTAACGTTCCACAAGAAGCACAAGGACATGGTGGTGAACANCNACCTCCCGTTCATCCTTCTAGAAGCGAAGTCGAAGAAGCAGGAGAGGAAGGCATTGACATTGAGGATCTTCACGGTGGACGACTACAAGAACGTTATGTACAGAAGCCCAAGCAAGGCGTGGGTGGGGACCACGCTGGACCACCCTGCCACGTTNGACACGCTGGCACTTGACAGCGTGGACGTTAGGGAGTTCGTTATGGGGGATCTGCGGCGGTTCGTGGAGATGAAGGGGTATTATAGGAAAGTTGGGAAGGCGTGGAAGAGGGGTTACCTGTTGTATGGCCCACCTGGTACAGGGAAATCCAGCTTGATCGCTGCCATGGCCAATTATCTGTGTTTTGATGTGTACGACTTGGAGCTCACGGAGTTGCGCTCTAACTCTGGGCTCAGACGGTTGCTCATCGGTATCCCTAATCGGTCCATTCTTGTGGTCGAGGACATCGATTGCACCATTGAGTTCCGCGATCGCTTCGCCGAATCCAGATCAGTACTCGCCATTGGACATGATAACAACAACGACAAACAGCAGGTCACGCTATCAGGGTTATTGAATTTCGTTGATGGACTATGGTCTTCTTGTGGAGATGAGAGGGTTATAGTGTTCACAACAAACCACAAGGAAAAGATTGATCCCGCGTTGTTGCGCCCTGGTCGCANGGATGNTCACATCCACATGTCCTATTGCACTCCCTATGGTTTTAGGCAGCTAGCCGCCNGTTACCTTGGAATTATGGAGCACGATCTCTTCGGAGAGGTCGAGGAAGCAATTCAGGAAACTCGGGTGACTCCAGCTGAAGTGGCGGAGCAGCTCCTGAAAAGCAGCGACACTGAAACTACTCTTGAAGAGTTGGTGGATTTTCTTAGAGTGAAGAAAGAAAGCCAGGATCAACTCGAGGAGGCTAAAAAGAGGGAAGAACAAGAGTCCGAAGATACGTATAGAGGAACAGCAGNGTGATAAATTAAGGAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	200621	208403	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007049.1	PF00004.24	AAA	97	232	1.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.933
SRR1783600	control	10.761
SRR1783602	moderate drought stress	16.913
SRR1811619	moderate drought stress	16.567

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.010
DRR006520	Root Summer glycyrrhizin high producing strain	9.673
DRR006521	Root Winter glycyrrhizin high producing strain	16.135
DRR006522	Root Winter glycyrrhizin high producing strain	15.540
DRR006523	Root Summer glycyrrhizin low producing strain	0.114
DRR006524	Root Summer glycyrrhizin low producing strain	0.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.829
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.419

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.023
SRR2868004	Drought Stress (root)	0.013
SRR2967015	Control (root)	0.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.734
SRR9715740	Leaf	22.049
SRR9715741	Leaf	19.199
SRR9715739	Root	1.350
SRR9715742	Root	11.911
SRR9715743	Root	10.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.140
SRR8749028	MeJA induced 9h	0.492
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.050
SRR8749031	Uninduced	0.001
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.788
SRR8400027	Control - Root	16.888