Gene detail

Gene detail information of Glyur000095s00007044.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55750.1	7.00E-174	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
NR	XP_004496077.1	0	PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum]
Swissprot	tr\|Q3ECP0\|TFB1A_ARATH	0	Probable RNA polymerase II transcription factor B subunit 1-1
trEMBL	tr\|V7BED6\|V7BED6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW16172.1}

Sequence

Transcript Sequence

>Glyur000095s00007044.2
AATTTGAGAACGACCTTCCTCCAACGATAAAAGAATTCATGCTGTCGAGTGTTGTCACTCAATATTCCGGAATCAGGCAGCGCCGTTGTTCTCTCCCCTTTTCCGATCGACGGAAGTAGACAGCGGCGCTTCTCGCGCTTTCTAGCACCTTAGAATTTGTTGGACCTTCTTAAGCTGATAACAACAATCCCTTTTCTATTCAATCTCACTCCTCCACACAAAAAATAAAAATAAATAAAAGGCGCTAGCGATTCATCACAATGCAACCAGTAGATTCCTCTATCGCGAAGACGATGCTTCTTTCTGATTATTAGGGATTTGATTGATTGATATTGATCCTCTACTTGGTTCTGAACCGAACTGTTTCTGCTGAATTGAATTCTTCTGCGGTTGTGGTTTAGCTTAGTTAGGTCAAGGATGTCTTCGGGACAAGTGGTTAAGCGTGCAAAATACAAAACCACTGTGAAAGACCCTGGCACTCCTGGCGTCCTCAGATTGACTCAAGAAAAGTTTGTTTTCAGGCCTAANGATCCAACATCAAATAACAAGCTCGAAGTCGATTTCAGAATTATAAAAAGTCATAAACACACCAAAGAGGGATCAAACAAACCGCCGTGGCTTAACCTTACTCATTCACAGGGAAGTTACATCTTTGAGTTAGAAAGCTTTTCAGATCTCCATACTTGCAGGGAATTGGTGGGTATTGCCCTTAGCAAGCATGGAGAAGCTACAAAAGTTATTTCCGAGGAACAGCTTAGCCCTGCTGAAATGGCACTCAGGATTAAGCTATTGCAAGAAGATAGCAAGTTGCAGAAGCTTCATATGGAACTTGTTGCTAGTGGAAAGCTTACAGAATCAGAATTCTGGGCTACGAAGAAGAAATTGCTGGACCAAGATGAAAGCAGAAAGTCAAAACAACGGACTGGATTTAAGAATTCTTTGATCTTTGACACAAAGCCTACTAGTGATGGTCGGATAAACCAGATTTTTACCCTTAAACCAGCAGTTCACCAGGCATTCCTCAAATTTGTTCCTAGTAAGCTGAGTGAGGTAGATTTCTGGAACAAATACTTTAAAGCTGAATATCTCCATAGTACCAAAAATGCCATTGCGGCAGCTGCTGAGGCTGCTGAAGATGAGGATCTTGCTGTGTTTTTGAAAGATGATGAGATATTAGAAATTGAAGCACGAAAGAAGGTTCGACGGGTGGATCCATCTTTAGACATGGAAGCAGACCAAGGAGATGATTACACTCATCTTCCTGATCATGGGATCTTCCGTGATGGTAGCAAGGAAATATCTGAAGCTCAACATCTTTTGTATCGGAGAACGTTGTTGCAAGATCTTAACAGACAAAGTGAAGTAGTTCTTGAAGGAAAAACTTTAGATATGGAGATGGAACACCCAAGAACAGTGGCAGAAGTTCTTGCTCGAAGAAAACAAGAATCTGATGGGGTTATGGAGGAGGAGAGACGAAACAGAATTTCTAAGATGACCCAGATTGAGGATCTTCAGTCACAAGATGATCATCCTTTTGCACCACTCTGTATCAAGGACCCTCGTGATTATTTTGATTCTCAACAAGTTAATGCAGTAAAAACTTTGGATGATTCCCTAGCTGGAAAGGAGCAAATAAGATGCAGTTTGGGTTCGGAGGAAGCCTATGGCTCTTTGAGGGCATCCATATCTAAGATAAAAGCTATGGGGTTGAGGGATCCTCTATTTAGTCCTGAGATTGCTCTTAAGGTCCTTAATGGATTGACCAAAAATATCTCAAGCACCAAGTCTCATCTCGGGAGAAATTCGCAGGAGAGTGTCCTTGATATATTGCCCGACACAACTAAGGAGAAACTACTAGATACCAGAAGACTGAAAGATGCCATATCACAAATATATTCTAAACTTGAGGAAATAAAGGTATCTGCACAGTCAGACCTGCGGCACCAGGTTTCCCTTGTTGTCCATCCTATGCAGCAGGCTCTGAATGCTGCCTTGTTACATTATGACGCTGACATAAGGAAAAGAAATGCAAAAGGACAGAAGCCTAATGGTTATGTTTAGGAGAATGCTTTGCCTCTGCGCACTTCCAGCATCATGCTATAACAATTTAGGAATGTATATTCCATCAATTTTGCCGGGACCTCAATTCAGTGTGGCTGTTTATCACTATTGTGATGAAATGGATTTATATTAGAATTAGCAAGCAAGAGTTTTACTAACTAGATAACTACGTAGAAATTACTTGTTTACTAGTCCAAACAAAGTTTGGGAACACTCCGTACGACATTGATACACACCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	160091	170036	+

Gene family

Gene family	subfamily
Transcription Factors Family	BSD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006289 nucleotide-excision repair

GO:0006351 transcription, DNA-templated

cellular_component
GO:0000439 core TFIIH complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007044.2	PF03909.12	BSD	123	164	3.10E-07
Glyur000095s00007044.2	PF03909.12	BSD	186	229	1.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.972
SRR1783600	control	21.786
SRR1783602	moderate drought stress	27.895
SRR1811619	moderate drought stress	27.517

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.417
DRR006520	Root Summer glycyrrhizin high producing strain	25.795
DRR006521	Root Winter glycyrrhizin high producing strain	29.715
DRR006522	Root Winter glycyrrhizin high producing strain	28.149
DRR006523	Root Summer glycyrrhizin low producing strain	27.815
DRR006524	Root Summer glycyrrhizin low producing strain	27.171
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.737
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.874

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.467
SRR2868004	Drought Stress (root)	21.362
SRR2967015	Control (root)	20.647

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.194
SRR9715740	Leaf	11.389
SRR9715741	Leaf	13.938
SRR9715739	Root	1.368
SRR9715742	Root	10.539
SRR9715743	Root	9.004

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.031
SRR8749028	MeJA induced 9h	27.076
SRR8749029	MeJA induced 9h	8.351
SRR8749030	Uninduced	18.156
SRR8749031	Uninduced	5.191
SRR8749032	Uninduced	6.074

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.190
SRR8400027	Control - Root	23.027