Gene detail

Gene detail information of Glyur000095s00007043

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G23020.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004496078.1	PREDICTED: pentatricopeptide repeat-containing protein At3g23020-like [Cicer arietinum]
Swissprot	tr\|Q9LS88\|PP250_ARATH	Pentatricopeptide repeat-containing protein At3g23020
trEMBL	tr\|Q1RSH5\|Q1RSH5_MEDTR	Tetratricopeptide-like helical {ECO:0000313\|EMBL:ABE86686.1}

Sequence

Transcript Sequence

>Glyur000095s00007043.1
ATGTCTGTGAAGCTGCAACTCTTGTACACCCACGCACCCATACTCGCAAACGGAAAAACAGTTTCTCCCTCAGAGAAACCCGAACAAGTTACCCCCACAATTAGAAAACAGAGACTCCCTCTCAATAACAGAACCAGCATTGTTAAGCGTGGACACGGAAGAAATCAAGAGGCCCAATNGAAGAAACAGGGTCCAGAGAAGAATTCAGATGACGGGGTTCCCCGAAAGAGAAAAACAAGTGGTGGTGGCGGCGGTGGTGTAGGGACTGAGAAGGTGCACACCATGTGTTCGACGAAATGGGTCTCTTACGGTGGGAACATTCCCGCGATTCTGAAAGACTTGGACACGAATCAGGACTTGGACGAGGCTTTCAGGCCGTGGCAAGAGAAGATTAACAACAAGGAAAGGAGCATCATTTTGAAGGAGCAGCTTAGGTGGGATAGAGCTTTGGAGATTTTTCAGTGGTTCGATGAAAATTCTCATGAGTTGAACGTGATTCACTACAACATCATGCTCAGGACCCTTGGTAAAGCAAGAAAGTGGACCCTTTTGGAGAGTTTGTGGAATCAGATGAATGCCAGAGGGATTGCTGCCACCAATTCCACTTATGGAACCCTGATTGATGTTCATAGCAAAGCCGGGCTTAGAGAAGACGCGCTTTTCTGGCTCGAAACGATGCTGGAACAAGGGATTCAACCTGATGAGGTCACCATGGTGATTGTAGTTCAACTGTACAAGAAAGCAGGAGAGTTTCAGAAAGCTGAGGAGTTTTTCAGAAAGTGGTCATTAGGTCAACCTTTGAGGCCAAACAATGATCATACCATGGCTGCTTTGGAATTGGACGAGAGGGTGTCATGTACCAATGGTTCTTTTGGTTCACACATATATAACACTTTGATTGATACATATGGAAAGGCTGGTCAGCTTAAAGAAGCTTCTGAGACTTTTGTTAAGATGCTTAAACAAGGGATACCGCCAACCACGGTGACATTCAATACAATGATTCACATTTGTGGAAACCATGGACGATTAGAGGAAGTAGGTTCACTTCTGCAGAAAATGGAAGAGCTACAATGCTCACCTGACACAAGGACATATAATACTCTCATCTCGGTCCATACTAAGCATAATGATATAGAGATGGCAACAAAGTGTTTTAAAAGGATGAAGGAGGACGGCCTCAAGCCGGATCTCGTGAGTTACCGTACCCTCTTGTATGCATACTCAATAAGGAAAATGGTTCATGAAGCAGAAGAGATTGTAGCAGAAATGGATGTGAGGGGCCTTGAAATTGATCAGTTCACTCAGTCTGCTTTGACTAGGATGTATATAGAAGCGGGAATGCTTGAACGGTCCTTGTTATGGTTTCAGAGGTTTCACCTGGCTGGCAATATGACATCTGAGTGCTATGCTGCCAACATTGATGCATATGGGGAGCATGGGCATGTTTTGGAAGCTGAGAAAGTCTTCATTTGGTGCCAAGAACGGAAGAATCTCAGTGTCCTTGAGTTCAATGTGATGATTAAAGCTTATGGTATAGGGAAATGCTATGATAAAGCCTGTCAATTGTTTGATAATATGGACAAACATGGTGTTGTTGCAGACAGATTCAGCTATAGTTCTCTCATACAAATTTTGGTCAGTGCTGACCGGCCGCATATTGCCAGACCTTATTTGGAAAAAATGCAGGAGGCAGGATTAGTGAGTGATTGCATCCCATATTCTGTCGTGATTTCCAGTTTTGCAAAATTAGGCCAATTGGAAATGGCAGAAGATGTATACAAGGAAATGATTGAACATGGTGTGAAGCCTGATGTTATAGTGTACGGGGTATTGATCAATGCTTTTTCAGATGTTGGAAGGTTCAAAGAAGCCATTAGATATGTTGAAGAAATGGAAAGAGCTGGCTTGCCGGGGAACACAGTTATATATAATTCTTTGATCAAGTTGTATGCAAAAGTTGGCTACCTGGAAAAAGTACAAGAAACATACAAGTTGCTTCAATCATCAGAAGAAGGTCCTTCTGTATATTCTTCAAATTGCATGATTGATCTATATACTAAGCACTCTATGGTTGACCAAGCAAAAGAGATATTCGAGACCTTAAAGAAAAATGGAACTGCTAGTGAGTTTACCTTTGCAATGATGTTATGTTTGTATAAGAAGATTGATAGGTTTGATGAAGCCATTCAAATTGCAAAGCAGATGAGAAAATTGGGACTCATGACAGATTCATTAAGTTATAATAACGTGCTCGACCTGTATGCTATTGCTGGGAGACCCAAGGAAGCGATAGAGACTTTCAACGAAATGGTAAGAGCTTCCATTCAACTTGATGATTATAGTTTTAGATCACTTGGAAATCTTCTGCTCAGATATGGAGCATCAAGGCAAGCTGTTGGCAAATTACAAGTATTGATGAAAAAGGATGCTTCACATGGTTTGCAGGCATGGATGTCAGCACTCTCAAGTGTGCTTGAAATAGATGATTATGATAACGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	156084	158588	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007043.1	PF01535.15	PPR	167	196	0.096
Glyur000095s00007043.1	PF13812.1	PPR_3	202	233	0.0014
Glyur000095s00007043.1	PF01535.15	PPR	236	260	0.99
Glyur000095s00007043.1	PF01535.15	PPR	295	324	1.50E-06
Glyur000095s00007043.1	PF13041.1	PPR_2	326	371	5.90E-13
Glyur000095s00007043.1	PF01535.15	PPR	399	429	0.018
Glyur000095s00007043.1	PF01535.15	PPR	504	532	0.00049
Glyur000095s00007043.1	PF13041.1	PPR_2	574	617	1.60E-11
Glyur000095s00007043.1	PF01535.15	PPR	642	669	0.0019
Glyur000095s00007043.1	PF01535.15	PPR	678	706	0.0014
Glyur000095s00007043.1	PF01535.15	PPR	712	741	0.84
Glyur000095s00007043.1	PF13041.1	PPR_2	744	786	2.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.229
SRR1783600	control	1.218
SRR1783602	moderate drought stress	1.505
SRR1811619	moderate drought stress	1.353

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.456
DRR006520	Root Summer glycyrrhizin high producing strain	1.600
DRR006521	Root Winter glycyrrhizin high producing strain	0.579
DRR006522	Root Winter glycyrrhizin high producing strain	0.596
DRR006523	Root Summer glycyrrhizin low producing strain	1.843
DRR006524	Root Summer glycyrrhizin low producing strain	1.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.496
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.868
SRR2868004	Drought Stress (root)	1.513
SRR2967015	Control (root)	1.595

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.530
SRR9715740	Leaf	3.077
SRR9715741	Leaf	2.196
SRR9715739	Root	0.162
SRR9715742	Root	1.327
SRR9715743	Root	1.112

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.077
SRR8749028	MeJA induced 9h	1.778
SRR8749029	MeJA induced 9h	0.757
SRR8749030	Uninduced	0.165
SRR8749031	Uninduced	0.306
SRR8749032	Uninduced	0.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.387
SRR8400027	Control - Root	3.033