Gene detail

Gene detail information of Glyur000095s00007042

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G23990.1	heat shock protein 60
NR	KHN00995.1	Chaperonin CPN60-2, mitochondrial [Glycine soja]
COG	YP_004013159.1	chaperonin GroEL [Rhodomicrobium vannielii ATCC 17100]
Swissprot	tr\|Q05046\|CH62_CUCMA	Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBL	tr\|Q1RSH3\|Q1RSH3_MEDTR	TCP-1/cpn60 chaperonin family protein {ECO:0000313\|EMBL:AES61894.1}

Sequence

Transcript Sequence

>Glyur000095s00007042.1
AGAGCCTTCCCTTCCCTTGAAAAAGAACCGTGCAGTGTTCACCCTCTACATCACAGTTTCTGCAATTTCNCTAGTGTTTTCTCCGTTTGCCAGTTGCTCAATCCAACCACATCATGTANCGCTTTGCCACCTCCCTTGCCTCCAAAGCTCGGATTGCTAGGAGCACCGGTCAACAGATTGGAAGTAGGGTGGGGTGGAGCAGGAATTATGCGGCCAAAGACATAAAATTTGGTGTGGAGGCTCGGGCTCTGATGCTCAAGGGTGTTGAAGAGCTTGCTGATGCCGTCAGAGTAACCATGGGCCCTAAGGGGCGTAATGTGGTGATTGAGCAAAGTTTTGGTGCCCCTAAAGTGACGAAAGATGGAGTAACTGTTGCTAAGAGCATTGAATTCAAGGATAAAGTCAAGAACATCGGTGCCAGTCTTGTAAAGCAGGTTGCAAATGCTACCAATGATGTGGCTGGTGACGGAACCACTTGTGCTACAATTCTTACTCGAGCAATATTTACGGAAGGGTGCAAATCAGTTGCAGCTGGAATGAATGCGATGGACCTGAGGCGAGGTATAAATATGGCTGTTGATGCTGTGGTGACAGACCTTAAAAGCAGAGCACGGATGATTAGCACTTCTGAAGAAATAGCCCAGGTTGGGACAATATCTGCTAATGGGGAGAGAGAAATTGGTGAGTTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAAGGTGTAATCACAATTTCAGATGGCAAGACATTGTACAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTTGACAGGGGTTACATTTCTCCATATTTCATAACAAATCAGAAGAACCAGAAATGTGAACTTGAGGATCCTCTCATTATAATCCATGAGAAGAAAATCTCNAGTATAAATGCTATAGTTAAAGTGTTAGAGTTAGCTTTGAAGAAACAAAGACCGTTATTGATTGTTGCTGAAGACGTGGAAAGTGATGCCCTTGCAACTCTTATTCTAAATAAGCTTCGTGCTGGAATCAAGGTATGTGCCATCAAAGCCCCTGGTTTTGGTGAAAATAGGAAAGCTGGTCTCCAGGATCTTGCTGTTCTCACAGGAGCTCAACTTATCACTGAAGAGCTTGGCATGAATCTTGAAAAAGTGGATCTGGATATGCTTGGCTCTTGCAAAAAGATTACTATTTCCAAAGATGACACAGTCATTCTCGATGGAGCTGGTGATAAGAAAGCAATTGAGGAAAGATGTGAGCAGCTTAGGTCTGGAATTGAAAATAGCACTTCAGATTATGACAAGGAAAAATTACAGGAAAGATTGGCTAAGCTTTCTGGGGGTGTTGCGGTGCTTAAGATTGGAGGAGCCAGTGAGGCTGAGGTTGGCGAGAAGAAGGATAGAGTAACAGATGCCTTAAATGCAACCAAGGCAGCTGTGGANGAGGGCATAGTACCTGGTGGTGGTGTTGCTCTTCTTTATGCATCAAATGAGTTGAGTAAGCTCCAAACTGCCAACTTTGACCAGAAGATAGGTGTCCAGATCATTCAAAATGCTTTAAAGACACCTGTACACACAATTGCATCAAATGCTGGAGTTGAGGGTGCTGTTGTTGTTGGTAAACTATTGGAACAAGATAACCCTGATCTTGGGTATGATGCAGCCAAAGGTGAATATGTTGATATGGTTAAAGCTGGAATAATTGATCCATTGAAGGTGATCAGGACCGCCTTGGTGGATGCAGCCAGTGTGTCGTCTTTGATGACAACAACTGAAGCTGTTGTGTCTGAACTCCCAAAGGAAGATAAAGATGTTCCTGCCATGGGTGGCGGCATGGGTGGCATGGATTATTAGGCGGCTATTTCCCCTTATGAATCTGGCTTTCTTTCATTGGACTTGGATGGATTAGAGTGGCTTCACCACTATTATTAGCCTTTTTTTCCTTATTTTTTTTTTTACAGAAGGCGTCTTTGTAATCATAGCGAGAGATCAAAGCTGTAGGTAGGAAAATTTGTGATTGTTGCTGCTGTGATAATTGAGATATTTGGAACATTTTTTTTTACCTTCTAAATAAGTAAGAAATTCAACTAAAAAAAAAAATAAGTAAGAAATTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	149600	154830	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042026 protein refolding

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007042.1	PF00118.19	Cpn60_TCP1	54	555	6.30E-119

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.253
SRR1783600	control	27.187
SRR1783602	moderate drought stress	31.077
SRR1811619	moderate drought stress	30.322

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.104
DRR006520	Root Summer glycyrrhizin high producing strain	52.963
DRR006521	Root Winter glycyrrhizin high producing strain	52.332
DRR006522	Root Winter glycyrrhizin high producing strain	50.857
DRR006523	Root Summer glycyrrhizin low producing strain	45.867
DRR006524	Root Summer glycyrrhizin low producing strain	45.952
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.530
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.271

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	98.985
SRR2868004	Drought Stress (root)	50.108
SRR2967015	Control (root)	45.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.895
SRR9715740	Leaf	46.359
SRR9715741	Leaf	30.524
SRR9715739	Root	8.857
SRR9715742	Root	49.334
SRR9715743	Root	44.962

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	123.019
SRR8749028	MeJA induced 9h	128.544
SRR8749029	MeJA induced 9h	74.823
SRR8749030	Uninduced	18.591
SRR8749031	Uninduced	7.703
SRR8749032	Uninduced	16.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.546
SRR8400027	Control - Root	70.743