Gene detail

Gene detail information of Glyur000095s00007013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10640.1	3.00E-116	SNF7 family protein
NR	AFK38216.1	3.41E-158	unknown [Lotus japonicus]
Swissprot	tr\|Q9SZE4\|VP322_ARATH	2.00E-12	Vacuolar protein sorting-associated protein 32 homolog 2
trEMBL	tr\|I3SD74\|I3SD74_LOTJA	1.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:AFK38216.1}

Sequence

Transcript Sequence

>Glyur000095s00007013.1
AGCGGATTCCCCAATTGAGTGGTTTTGTGATCTGTCGTGTGAAGCTGCAAAACCCAAAGGAANAAGTCTCTACCTCTCTCTGTCTCCGTCATTCCTCTCTCTCGTGCTCACATCGCGAACACGCGGTTATACCTTCCATTCAATTCAATTTCAATTTCAAATTTCAAGGGCTGGGTGCGTGCGAGATCAGGAACAAGAGGCGTTAACGATGAAGAGGGTGTTCGGTGTGAAGAAGAACAAGGATCCTCCTCCTTCCGTTCAGGATGCCTCCGAAAAGATTACTAAACGAGGTGATACAGTGGAGGAGAAGATTAAGAAGCTCGACATTGAACTTAATAGATATAAGGAACAGATCAAGAAAACAAGACCAGGTCCTGCCCAGGAAGCTGTTAAAGCTAGAGCCATGAGGGTTCTTAAACAAAAGCGAATGTATGAAGGTCAACGTGACATGCTNTATAATCAGACATTCAATCTTGATCAAGTTCAATTTGCTGCTGAGGGCATTAAAGATGCTCAACAAACTATGTCAGCTTTGAAGTCTGCCAACAAGGAATTGAAGGGAATGATGAAAACTGTGAAGATCCAAGATATTGATAACTTGCAAGATGAGATGATGGACCTGATGGATGTAAGTAATGAAATACAAGAGACTTTGGGTAGAAGCTATAGTGTTCCAGATGACATTGACGAGGATGAACTNATGGGTGAACTTGATGCACTGGAAGCAGACATGGGAAATGAAACTGAAGCTGATGGAGTCCCCTCCTACCTCCAACCTGATAAAGAATCTGATTTGGAGGCAGAGCTTAACTTACCTTCAGCTCCATCAGGACAAACAGCAGCACCACATGGCAGAGCCAATGCCCAGAGTGAGGACGAACTGGGTTTACCTGCTGTCCCTCGGGCATCATTACGCGGTTAAGGAATGCTTTATATGTCATTGGCGTAGCTGGTGCATACACGAGCAAGGCCCTGTAAAGATGTGCAGAACGATGATTAATAGTGATTTAATTGGTCTGGTGTTGGCATTATTTGTGACTTAGTACCTTCTTTCCCCTTATAATAATACCTTATGGAAGCGTATTTTTATTACTTGTATGAAAGGGACCATGACACGAAAAAGAAAAAGAAAAATATTACCGGAGTTTGGTAAAAGCTTAGAACCTGGCAGTTATGTTCAGAGCAAAAATGAGCTGGGGTGATAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	23967	27651	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007034 vacuolar transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007013.1	PF03357.16	Snf7	13	209	2.30E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.526
SRR1783600	control	45.113
SRR1783602	moderate drought stress	37.992
SRR1811619	moderate drought stress	37.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.704
DRR006520	Root Summer glycyrrhizin high producing strain	61.000
DRR006521	Root Winter glycyrrhizin high producing strain	87.287
DRR006522	Root Winter glycyrrhizin high producing strain	84.346
DRR006523	Root Summer glycyrrhizin low producing strain	109.734
DRR006524	Root Summer glycyrrhizin low producing strain	111.508
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.494
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.848

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	96.337
SRR2868004	Drought Stress (root)	96.879
SRR2967015	Control (root)	79.620

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	89.435
SRR9715740	Leaf	80.822
SRR9715741	Leaf	111.983
SRR9715739	Root	12.224
SRR9715742	Root	33.127
SRR9715743	Root	30.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	135.985
SRR8749028	MeJA induced 9h	150.698
SRR8749029	MeJA induced 9h	192.624
SRR8749030	Uninduced	130.075
SRR8749031	Uninduced	277.952
SRR8749032	Uninduced	230.763

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.535
SRR8400027	Control - Root	81.069