Gene detail

Gene detail information of Glyur000095s00007012.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73080.1	0	PEP1 receptor 1
NR	XP_003555482.1	0	PREDICTED: receptor-like protein kinase-like [Glycine max]
COG	YP_004775215.1	6.00E-64	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P93194\|RPK1_IPONI	0	Receptor-like protein kinase (Precursor)
trEMBL	tr\|I1NHU2\|I1NHU2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G33620.1}

Sequence

Transcript Sequence

>Glyur000095s00007012.1
GCTTCAGCTTCTTGTAACTCCTTCTTCCTTTTCTCTTTATGGGGTATCTCTATCTCTTGGTGTTGCTTCTTTGCTTTTCTACCTTGTTATATGCTGCTTCTGCCTTGAACTCCGATGGGTTGACTTTGTTGTCACTCTTGAGGCATTGGACTTTTGTGTCTAGTGACATAAACTCCACCTGGAAGGCCTCTGATTCCACTCCATGCTCATGGGAAGGAGTGAATTGTGATCATTCCCACGATGTAATATCTCTAGAGCTAAGCAATTATTCAATTTTTGGTCGATTGGGACCTGAAATTGGACACTTGATTAACCTCCAAACCATAGACTTGTCAGATAATCATCTCTCAGGAAAAATTCCCCTAGAATTAAGCAATTGTAGCNGGCTTGAGTACTTGTCCCTTTCTGCAAACAACTTTAGTGGAGGAATACCTGAGAGCTTCAATGACTTGCAAAACTTGAAATCNTTGGACCTCTCTTCTAATCTACTGTCTGGTGAGATTCCTGAATCCTTGTCCAAAATTCCTCACCTGGAAGAACTGTATCTCAGCAACAACAGTTTCAGTGGTTCCATTCCCTCAAATATTGGGAATATCACTAAGCTTGTCTTTCTATATCTTGACATTAATCAGTTGTCAGGGACAATTCCCATATCCATTGGAAACTGTAGTAAATTAAGGGAACTGATTATGGAGTCGAATCTATTGCAGGGAGTTATTCCTGAGAGTCTAAACAATCTAAGAGATCTTTATGAGATAAATCTAAATAGTAATGATCTTGGGGGTACCATTCAGTTAGGATCAACAAATTGCAAAAAATTATCTTATTTGAGTCTTTCTCACAATGGATTTAGTGGGGGTATTCCCCNAGGCTTGGGGAATTGCACTGGTCTAATAGAGTTCTATGCTGCACAGAATAACTTAGTTGGCACTATACCATCCACCTTTGGTCTCCTGCACAATCTTTCTAGGCTAATACTGCCAGTGAACCTTCTTTCTGGGAAAATACCTCCACAGATTGGTAATTGCAAGTCATTGGAAATGTTGCATTTGTATACCAATGGACTTGAGGGAGAGATTCCTAGTGAATTGGGAAACTTGANTAAATTAAGTGACCTTAGATTGTTTGAAAACCATCTGATAGGGGAAATTCCACTTAGCATATGGAAAATTCAAAGCCTTGAGCATGTCCTTTTNTACAATAACAGCCTCTCTGGGGAGCTACCTTTAGAGATGGCAGAGCTCAAAAATCTCAANAATATCTCACTGTTTAACAACCAGTTGTCTGGAATCATACCTCAAGGCTTAGGCATTAATAGCAGTTTGGTGCAGTTGGACTTCATGTTTAACAAGTTCACTGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGCAACTAGTCAAGCTGAATATGGGTTTCAATCAATTTAATGGAAGCATACCTCCTGATGTGGGAAGGTGTACAACTCTTACAAGGGTGAGACTTGAAGAGAATCATTTCACTGGGCCTCTTCCTGATTTTGAAGTCAATCCAAGTATCTCATACATGAGCATCAACAAGAACAATATCAGTGGAGCAATTCCACCTAGTTTGGGGAACTGCACAAATCTCTCTTTTTTAGATTTGTCCATGAACANCTTAACTGGTCTTGTACCCTTAGAGCTAGGAAACCTTGTGAATCTCCAGACTTTGGATCTCTCTTACAACAACTTGGAAGGTCCTTTGCCACCTCANTTGTCAAACTGTGCCAGAATGGGTAAGTTTGATGTGGGATTCAACTTCCTCAATGGTTCATTTCCATCAAGTTTGAGGAGCTGGACAAAATTAACCACTTTAATTCTCAGAGAGAACCGTTTTAGTGGGGGTATCCCAACTTTCTTGCCAGAATTTGAGAAGCTCGATGAGTTACAACTTGGTGGAAATATGTTTGGANGAAATATTCCTAAATCAATTGGAGAATTGAAGAATTTGCTATATGGGTTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTAGGGAGATTGGAAACCTCAAGAGTCTGCTAAGACTAGATCTATCTTGGAACAATTTGACAGGAAGGATCCAAGTTCTTGGTGAGCTCAGTTCATTATCTGAACTAAACATCTCATACAATTCTTTTGAAGGTCCTGTACCACAACAGCTGATGAAGTCATCAAATTCTTATTCATCATTTTTGGGCAATCCTGGCCTGTGTGTCAGTTTCTCACTATCCAATGGCTTGAATCTCACTGGAAGCAGCAATCTAAGGCTGTGTGATGATGACTCAGAATCACAAGGCCTCAGTAAAGTTGCAACTGTGATGATAGCACTTGGATCCTCAATATTTGTCGTTCTGCTGCTGGGATTAATTTATATATATATTGTCAGAAAGACTAAACAGGAAGCCATGGTCACTAAGGAAGATGNTTCTTCAGCCCTTCTCAAGAAAGTGATGGAAGCTACAGAAAATCTAAATGATCAGTATATTATTGGAAGAGGAGCTGAGGGGGTTGTTTATAAAGCTGCAATAGATCCAGACAAAATCTTNGCTGTAAAGAAGCTTGAATTTGCTGAGGATGATGAAAGGAAACGCTTAAACATGATCAGAGAGATTCAGACCCTTGGAAAGATTAGGCATAGAAACTTGATCAGGTTGGAAGAGGTGTGGTTGAGAGAAAACTATGGTCTAATCTCATACAGATACATGCCAANTGGAAGCCTTTATGATGTTTTGCATGAGAAGAATCCACCACAATCCTTAGAATGGAGTGTCAGGAATGAGATAGCTGTTGGAGTTGCTCATGGATTGGCNTATCTTCATTATGACTGCGACCCTGTCATTGTGCACAGAGACATCAAAACAAGCAACATACTTCTAGATGCTGAAATGGTGCCTCACATTGCTGATTTTGGTGTTGCCAAGCTTTTGGATCAGCCTTCTACATCAACACAGTCAATATCCGTTACTGGTACACTTGGTTATATTGCACCAGAGAATGCTTATACAACANCAAAGGGTAAGGAGACTGATGTATACAGTTATGGGGTAGTTTTGTTGGAGCTGATATCAAGAAAGAAGGCATTGGATCCATCATTTGTGGAAAGAATGGATATAGTTAATTGGGCTAGAGCTGTCTGGGTGGAAACAGGAGTTGTTGATGACATTGTTGATTCAGAGCTTGCCAGTGAAATTTCGAATTCTAATGTAATGAAACAAGTAACCAAAGTGCTTTTGGTGGCTTTAAGATGTACAGAAAGGGATCCACGTANGAGACCCACAATGAGAGATGTTGTCAAACATTTGTAGATGCAAAACCCCACATAACAAAGATCTAGTTTTCTTAAGGCTTATACAGCTTTTATAATCATAATA

Protein Sequence

>Glyur000095s00007012.1
MGYLYLLVLLLCFSTLLYAASALNSDGLTLLSLLRHWTFVSSDINSTWKASDSTPCSWEGVNCDHSHDVISLELSNYSIFGRLGPEIGHLINLQTIDLSDNHLSGKIPLELSNCSXLEYLSLSANNFSGGIPESFNDLQNLKSLDLSSNLLSGEIPESLSKIPHLEELYLSNNSFSGSIPSNIGNITKLVFLYLDINQLSGTIPISIGNCSKLRELIMESNLLQGVIPESLNNLRDLYEINLNSNDLGGTIQLGSTNCKKLSYLSLSHNGFSGGIPXGLGNCTGLIEFYAAQNNLVGTIPSTFGLLHNLSRLILPVNLLSGKIPPQIGNCKSLEMLHLYTNGLEGEIPSELGNLXKLSDLRLFENHLIGEIPLSIWKIQSLEHVLXYNNSLSGELPLEMAELKNLXNISLFNNQLSGIIPQGLGINSSLVQLDFMFNKFTGTLPPNLCFGKQLVKLNMGFNQFNGSIPPDVGRCTTLTRVRLEENHFTGPLPDFEVNPSISYMSINKNNISGAIPPSLGNCTNLSFLDLSMNXLTGLVPLELGNLVNLQTLDLSYNNLEGPLPPXLSNCARMGKFDVGFNFLNGSFPSSLRSWTKLTTLILRENRFSGGIPTFLPEFEKLDELQLGGNMFGXNIPKSIGELKNLLYGLNLSANGLIGELPREIGNLKSLLRLDLSWNNLTGRIQVLGELSSLSELNISYNSFEGPVPQQLMKSSNSYSSFLGNPGLCVSFSLSNGLNLTGSSNLRLCDDDSESQGLSKVATVMIALGSSIFVVLLLGLIYIYIVRKTKQEAMVTKEDXSSALLKKVMEATENLNDQYIIGRGAEGVVYKAAIDPDKIXAVKKLEFAEDDERKRLNMIREIQTLGKIRHRNLIRLEEVWLRENYGLISYRYMPXGSLYDVLHEKNPPQSLEWSVRNEIAVGVAHGLAYLHYDCDPVIVHRDIKTSNILLDAEMVPHIADFGVAKLLDQPSTSTQSISVTGTLGYIAPENAYTTXKGKETDVYSYGVVLLELISRKKALDPSFVERMDIVNWARAVWVETGVVDDIVDSELASEISNSNVMKQVTKVLLVALRCTERDPRXRPTMRDVVKHL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00095	18121	21609	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000095s00007012.1	PF08263.7	LRRNT_2	23	64	4.10E-05
Glyur000095s00007012.1	PF00560.28	LRR_1	92	114	0.031
Glyur000095s00007012.1	PF13855.1	LRR_8	117	174	2.20E-09
Glyur000095s00007012.1	PF13855.1	LRR_8	188	247	2.60E-06
Glyur000095s00007012.1	PF13855.1	LRR_8	498	558	7.50E-08
Glyur000095s00007012.1	PF00069.20	Pkinase	817	1089	2.20E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.867
SRR1783600	control	0.798
SRR1783602	moderate drought stress	0.828
SRR1811619	moderate drought stress	0.807

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.339
DRR006520	Root Summer glycyrrhizin high producing strain	3.402
DRR006521	Root Winter glycyrrhizin high producing strain	4.280
DRR006522	Root Winter glycyrrhizin high producing strain	4.402
DRR006523	Root Summer glycyrrhizin low producing strain	7.591
DRR006524	Root Summer glycyrrhizin low producing strain	7.763
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.424

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.594
SRR2868004	Drought Stress (root)	19.219
SRR2967015	Control (root)	24.834

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.156
SRR9715740	Leaf	43.918
SRR9715741	Leaf	81.175
SRR9715739	Root	1.344
SRR9715742	Root	9.718
SRR9715743	Root	7.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.191
SRR8749028	MeJA induced 9h	28.689
SRR8749029	MeJA induced 9h	10.558
SRR8749030	Uninduced	24.484
SRR8749031	Uninduced	35.099
SRR8749032	Uninduced	24.988

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.803
SRR8400027	Control - Root	3.708