Gene detail

Gene detail information of Glyur000094s00007893.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48560.1	2.00E-57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_004492265.1	9.16E-178	PREDICTED: transcription factor bHLH78-like [Cicer arietinum]
Swissprot	tr\|Q9FJL4\|BH078_ARATH	2.00E-90	Transcription factor bHLH78
trEMBL	tr\|I1KZ15\|I1KZ15_SOYBN	1.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G46040.1}

Sequence

Transcript Sequence

>Glyur000094s00007893.1
CAAAAAACTAAAGGTCAAACGCAGAGAACTTGGACTCAACTGTGTTGGATCTCTATTTAGCCACCTCGTTACAACCCCATCAATCCCCCTTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTTTGCTTATAGCTTTTTAATTTACCAGAAGATACATTTTCCTTTTCACACCCAACCCAACTCTCTCCTTTCCCACTCAAATCCCACCAAATTGACCCCCTTTCATTGATCACTCCATTCCACCACCCCAATTCACCCCTCTTTTTTCATCAAATGTAATTCATAAGCCTTCCACCTTATTAGGGACATCATCAAAATTCATTCTCCATATTAACTTGATTTCATCACCTCCCAAAAAAAAAAACTCAATTTTATTTTCTGGGTTTTCCTTGATCTGCTTTTTCAGCTTTCCCTTGATGGAAAACCAATTNTTTTCTAATAATGCCAATGGTGTCCCTCCTCCTCAGCTGCTGCAGCATCATCATTTTGAGCCTTCAACAATGCCCACTTGGCTTCAATCTCTGTCCATGAATTGTTCCTCTTCTGAACAACAACAACAGACCCAAGATTGTTGCTTCTACAACACCCCAACAACAACAACAACTTGTTGGGACAGCAAGTCAACGGATCATCATCATGGTGTTGCTCAGTTTGATTCTTCAGCTCTGAGTTCAATGGTGTCTTCCCCTGCAGCTTCAAATTCCAACAACATGTCCAATGAGAACTTTGTAATAAGGGAACCAATTGGGAAACTGGGAAACNTTGGTGGAAATGGTGGTTGTTCTGATCATGAAATCTCACCTCATTCCATGCCTTTGGTTGCTATTGGTGCTGCATCTTCCTATTACAACAACAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCCCCTAAGAAGATTAACATTAACACCACCTTGAATTCCAGTGTGGCAGAATTCTCAACCGATCCTGGGTTTGCAGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGCAGGAGTTTCAATGGAAGGAGTAGTAACCTAAACAACAACAATGCTGAATTGTTGGCTCAGAGATCTAGTACTACCTCTTTGTTGATGGAGAATGGGAAGCTACCTAGAGTCTCAAGTAGTCCATCACTCAAAGCACTTGGATCTCAATCTCAAATGGAGAACAAGAATTCTCAATTAATGCAGCAGCAGGAGCAAATGGAAGTTGCTGCCAATTCTCAAGAGGAATCTACAATCTCTGAACAGGACACAATTGGGGTGAAACCTTCCCCTAATCATGTGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAAATTCAACCTTTACTACCACCAACCCTTCTCCCATGCGGAGCAAGCCAAATGAGGGTGAGAAAAATGAAAATGGGCCAGTGAAGGCAGAGGAAGAGTCCAAAGGAGGTACTAGTAATGCTGCAGGTGATGAGAAACAGAACAAGAGTAACACAAAACCTCCTGAACCTCCAAAGGATTACATTCATGTAAGAGCAAGAAGAGGTCAAGCCACTGATAGCCATAGTCTTGCAGAAAGAGTTAGGAGGGAGAAAATCAGTGAAAGGATGAAGTTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACTGGCAAAGCACTCATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAATTGGCTTCTGTTAACACCAGGCTGGACTTTAGTATTGAAAGTGTAATCTCAAAAGATTTTCCATTAACATTCTCTGAGGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGTCAATAGTAGTAAAACACCAATACAATTTCAGAGTTTCAACGGCTCAAAACAAGTGCCCCTATGAAGTTCTGTTCTGATCACCATTCATTACGCCTGAATTGAAGCTGAGAGGAATAGAAAGAAGACTTCTGTTGTAAACACCAACAAGAGATTTAATTGGAACAACCCCATGAATTATTAAGCCATTATTATCACTAGGACTAATAGAAGCCTCTTTTGTCTTCATGTTATAGCCTTTTTTATTTTATATTTTTCTTCTTACCCTTTCCCTCTCCATGATGTTAATTTTTATAGCCTTTTTTATTTTATATTTTTCTTCTTACCCTTTCCCTCTCCATGATGTTAATTTTTAATCTTCAGGGGTAGTTTTCTTTCAAATTTTCTTCTTCTACTTTTTGTACAACTATTCACTGTAAAATCTTTAGGACCGATTCTGTATTCTCTTTGGTGCATATTCTTATTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	321166	324923	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007893.1	PF00010.21	HLH	377	424	4.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	78.714
SRR1783600	control	77.973
SRR1783602	moderate drought stress	76.998
SRR1811619	moderate drought stress	77.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.689
DRR006520	Root Summer glycyrrhizin high producing strain	51.988
DRR006521	Root Winter glycyrrhizin high producing strain	2.621
DRR006522	Root Winter glycyrrhizin high producing strain	2.660
DRR006523	Root Summer glycyrrhizin low producing strain	39.923
DRR006524	Root Summer glycyrrhizin low producing strain	39.353
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.406
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.893
SRR2868004	Drought Stress (root)	33.481
SRR2967015	Control (root)	44.883

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.855
SRR9715740	Leaf	1.348
SRR9715741	Leaf	1.158
SRR9715739	Root	13.340
SRR9715742	Root	32.836
SRR9715743	Root	27.671

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.940
SRR8749028	MeJA induced 9h	55.337
SRR8749029	MeJA induced 9h	24.146
SRR8749030	Uninduced	23.022
SRR8749031	Uninduced	10.899
SRR8749032	Uninduced	5.456

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	83.216
SRR8400027	Control - Root	104.448