Gene detail

Gene detail information of Glyur000094s00007892.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76690.1	2.00E-20	12-oxophytodienoate reductase 2
NR	XP_003517567.2	1.65E-29	PREDICTED: 12-oxophytodienoate reductase 2 [Glycine max]
COG	YP_001519129.1	3.00E-15	oxidoreductase, FAD/FMN-binding family protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9XG54\|OPR1_SOLLC	1.00E-27	12-oxophytodienoate reductase 1
trEMBL	tr\|F6I440\|F6I440_VITVI	5.00E-30	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61620.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	304343	304600	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05894	OPR	EC:1.3.1.42	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007892.1	PF00724.15	Oxidored_FMN	16	61	4.90E-05

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.705
SRR1783600	control	0.711
SRR1783602	moderate drought stress	2.375
SRR1811619	moderate drought stress	2.064

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.808
DRR006520	Root Summer glycyrrhizin high producing strain	4.534
DRR006521	Root Winter glycyrrhizin high producing strain	3.965
DRR006522	Root Winter glycyrrhizin high producing strain	3.878
DRR006523	Root Summer glycyrrhizin low producing strain	5.822
DRR006524	Root Summer glycyrrhizin low producing strain	2.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.096
SRR2868004	Drought Stress (root)	0.216
SRR2967015	Control (root)	0.017

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.172
SRR9715740	Leaf	0.016
SRR9715741	Leaf	0.029
SRR9715739	Root	0.026
SRR9715742	Root	0.000
SRR9715743	Root	0.145

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.623
SRR8749028	MeJA induced 9h	0.085
SRR8749029	MeJA induced 9h	0.083
SRR8749030	Uninduced	0.311
SRR8749031	Uninduced	0.067
SRR8749032	Uninduced	0.337

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.037
SRR8400027	Control - Root	0.147