Gene detail

Gene detail information of Glyur000094s00007890.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76690.1	2.00E-160	12-oxophytodienoate reductase 2
NR	XP_003517567.2	0	PREDICTED: 12-oxophytodienoate reductase 2 [Glycine max]
COG	YP_722736.1	5.00E-108	NADH:flavin oxidoreductase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q8GYB8\|OPR2_ARATH	0	12-oxophytodienoate reductase 2
trEMBL	tr\|I1JAQ7\|I1JAQ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G44600.1}

Sequence

Transcript Sequence

>Glyur000094s00007890.1
ATGGCTGCTGTTGATTATCCCATTCCTCTTCTCACTCCTTACGAGATGGGCAACTTTAACCTAGTTGTTTTGGCACCACTCACAAGACAGAGATCCTACAATAATGTTCCTCAACCCCATGCGATCTTGTGTTACTCTCAGAGGGCTTCTAACGGAGGTCTTCTCATATCTGAATCCGCTGGTGTCTCTAACACCGCTCAAGGGTATCCAAACACACCGGGCATATGGACAAAGGAGCAAGTCGAAGCATGGAAACTCATTGTCGATGCTGTTCATGCCAAAGGCGGTGTATTCTTTTGTCAGATTTGGCACGCTGGAAGGTGTTCAAATTCAGTTTATCAGCCAAATGGGCAAGCACCAATATCTTCTACAGACAAGCCACTCCCATCACAAATTCGAAGTAATGGCATTGATGTTGCACAATTCACTCCACCAAGGCGACTAAGAACAGATGAAATTCCTCAGATTGTCAATGACTTCAGACTTGCTGCAAGGAATGCTATGGAAGCTGGTTTTGATGGGGTTGAAATCCATGGGGCTCATGGCTACCTACTTGAGCAATTTATGAAAGACAGAGTGAATGATCGAACAGATGAATATGGTGGATCCCTTGAGAATCGATGTCGGTTTGCTTTGGAAGTCGTTGAAGCTGTTGTGGATGAGATAGGGGCAGAGAGAGTTGGGATTAGATTGTCACCTTTTGCAGAATATCAAGAATGTGGAGACTCAAACCCCAAAGAATTGGGGCTCTATATGGTTAATGCCCTCAATAAATATGGTATTATGTACTGTCACATGGTGGAACCAAGAATGAAAACTATTGCTAAAATGCTTAAATGTCCTCATAGTCAAAGCTTGGTGCCAATGAGAAAGGCCTTCAATGGCACTTTTATAGTTGCTGGAGGTTATGATAGACAAGATGGGATCAATGCCATAGGTGAAGACAGGGCAGATCTTGTTGCTTATGGTCGTTTGTTCTTAGCTAATCCAGATTTGCCAAAGAGATTTGCACTTGATGCTCCTCTCAACAAGCATAACCGGGAGACATTCTACACTTCTGATCCAATATCAACAACCGGTGTTACCGCATACTAATCACTGCAAATGGCCGCTCCCGATTCTGTTCCTCTCCTTACTCCTTACAAGATGGCCAACTTCAATCTCTCCCATAGAGTTGTTTTGGCACCGCTCACCAGACAGAGATCCTACAACAATGTTCCTCAACCCCATGCTATCCTCTATTACTCTCAGAGGACTTCTAACGGAGGTCTTCTCATAGCCGAAGCTACTGGCGTCTCCGACACCGCTCAAGGGTATCCAGACACGCCGGGCATATGGACAAAGGAGCAAGTGGAAGCGTGGAAGCCCATTGTGGATGCTGTTCATGCCAAAGGCGGTGTGTTCTTTTGTCAGATTTGGCATGTTGGAAGGGTCTCAGATGCAGTTTATCAGCCAAATGGGCAAGCACCAATATCTTCTACGGACAAGACACTCACACCACAAATTCGAAGTAATGGCTTTAATGTAGCACAATTTACGCCACCAAGGCGGCTAAGGACAGATGAAATTCCTCAGATTGTCAATGACTTCAGGCTTGCTGCAAGGAATGCTATCGAAGCTGGTTTTGATGGGGTTGAGATCCATGGAGCTCATGGCTACCTACTTGAACAATTTATGAAAGACAAGGTGAACGACCGAACCGATGAATATGGTGGATCCCTTGAAAACAGATGTCGATTTGCTTTGGAAGTTGTTGAAGCTGTTGCGAATGAGATAGGGGCAGAGAGAGTTGGGATTAGATTATCACCTTTTGCAGAATATGCAGAATGTGGAGACTCAGATCCCAAAGCATTGGGGCTTTATATGGCAAATGCCCTCAATAAATNTGGTATTCTGTACTGTCACATGGTGGAACCAAGAATGAAAACTGTTGGTGAAATATCTGAATGCCCCCACAGCTTGGTGCCAATGAGAAAGGCCTTCAATGGCACTTTTATGGTTGCAGGAGGTTATGACCGACAAGATGGGATCAATGCCATAGCTGAAAACAGGGCAGATCTTGTTGTTTACGGTCGTTGGTTCTTAGCTAATCCNGATTTGCCAAAGAGATTTGCGCTTGATGCTCCTCTCAACAAGTATAACCGGGAGACATTCTACGTTTCTGATCCAGTTCTTGGTTATACTGACTACCCATTTCTTGAATGAAGAAACCGATGCTGCTGCATCCAAGGGTGGAACCACCTTTTTGAATAAGCTTTTTTACCCTTGCACATTCCTTTTTGCAATTTAGTTGGCCAGTGAAATAAGAATTATGATGCTTTTGTTTTGTATTGACATATTCTTCTCATGCTTCTCTGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	290105	304235	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05894	OPR	EC:1.3.1.42	alpha-Linolenic acid metabolism	map00592
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007890.1	PF00724.15	Oxidored_FMN	12	341	1.90E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.237
SRR1783600	control	2.201
SRR1783602	moderate drought stress	1.428
SRR1811619	moderate drought stress	1.374

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.958
DRR006520	Root Summer glycyrrhizin high producing strain	2.144
DRR006521	Root Winter glycyrrhizin high producing strain	1.804
DRR006522	Root Winter glycyrrhizin high producing strain	1.750
DRR006523	Root Summer glycyrrhizin low producing strain	10.122
DRR006524	Root Summer glycyrrhizin low producing strain	10.245
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.451
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.386
SRR2868004	Drought Stress (root)	141.613
SRR2967015	Control (root)	56.771

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	62.928
SRR9715740	Leaf	36.694
SRR9715741	Leaf	129.371
SRR9715739	Root	2.378
SRR9715742	Root	9.169
SRR9715743	Root	7.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.795
SRR8749028	MeJA induced 9h	34.757
SRR8749029	MeJA induced 9h	40.906
SRR8749030	Uninduced	117.770
SRR8749031	Uninduced	190.378
SRR8749032	Uninduced	63.806

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.586
SRR8400027	Control - Root	40.036