Gene detail

Gene detail information of Glyur000094s00007889

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14790.1	0	ATP-dependent RNA helicase, mitochondrial (SUV3)
NR	XP_003537614.1	0	PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Glycine max]
COG	YP_002298325.1	2.00E-76	RNA helicase RhrA [Rhodospirillum centenum SW]
Swissprot	tr\|Q9SMX1\|SUV3M_ARATH	0	ATP-dependent RNA helicase SUV3, mitochondrial {ECO:0000303\|PubMed:10570936} (Precursor)
trEMBL	tr\|I1LFV4\|I1LFV4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G00970.1}

Sequence

Transcript Sequence

>Glyur000094s00007889.1
GTCTAAACCCATGAGAAATTGGTTCAAATTTTAGGAACACGATCTAACGAGGGTAGTTTAGTTGAGAATATATAATGAGTTTGTAAATAAAAGGGTCAATGNTGGATTCTACAAAATTCAAAACAAGTGTAACTAAATCCCAAATCAGATCAAAGTTCTAGCTATGGTGGTTAAAAAAAAATCATGCAAGCCTAATCAATCAATTATTCAATTATCAATTATCGATCAATTAGTCAATTAGTAATCCCTAAAGTGAAAGGGCTGAGGCGCTGAGCCAAATCCAAATAATAATATTGGCGCTAGCTATATTGTTGTGTTGAGTGGTTGAAGTCTGAAGGGGCGGAGGAGAGTGAGGTTCGCTGATCGTGTGGCCAAACATAACAAGATTTTCGATCCATCCACCGCCACTGCCACCGCGATCGCATGTTACTTTATTCTTTCCTTTCTCTTCTCCTATTCTCTTTCTATTTGACTCTATTTTTCTATCTAACTTCCTCACATTCACACTCTCTTTCCATTTCCAACGACAAATGACTTTCTTCTTTCTTCGCCGCAACCGCGATGTCTTCGCTCGCGCTCTAATCGGTATTAAGGAGCCTTTTCGTGTATACTTTCGGTTCAAATTTGAATGTTTAGGTGGAGGTGGTGGTTTCAACAAGGTACACCCGTATAGCAGCAGTCGTGGTTCCATCAGAAATGATTTTACCGACTTGACTTGCCCTCATACATGGTATCCGCAGGCCAGGAGGAAACGTCGCAGGGTTATCCTGCATGTTGGTCCCACTAATAGTGGTAAAACACATAATGCTCTGAAGCAACTTGAGTCGAGTGCTTCTGGAATATATTGTGGTCCTTTAAGATTGTTGGCATGGGAGATAGCAAAACGGTTGAACAAGGCAAAAGTTCCTTGTGATCTCATTACGGGTCAGGAGAGAGAGGAAGTTGACGGTGCAAATCACAAGGCNGTTACAGTTGAAATGGCTGATGTATCAGTTGATTATAAATGTGCTGTTATTGATGAAATTCAGGCTACATTTGTATTTAAGGAGGCATTGATGGCTTTGTGGGCTTTGCTAGCCATTATGTTGGGGTGTAATACAAGGGGCTATTCATTTACACGTGCTTTACTGGGCATTGCTGCTGATGAACTTCACCTTTGTGGTGATCCAGCTGCTGTTCCCCTTATTCAGGAGATATTGAGTATTACTGGTGACGACGTNGAGGTTAAGTTTTATGAGAGATTGTCACCTTTAGTCCCACTGAAGGTTCCTCTTGGATCCTTCACTAACATAAGAAAAGGTGATTGCATTGTAACCTTTTCACGTCAGGAGATATACAGATTGAAGAAGAGAATTGAGAGAGAAGGAAAGCATCTTTGTTCAGTAGTTTATGGTTCACTGCCGCCAGAAACTCGAACAAGACAGTTTATAGGACTGCAGGCAAGCATGTTCAATGATGCAAGTAGCGAGTTTGATGTTCTANTGGCCAGTGATGCCATTGGAATGGGTCTTAATCTGAACATCTCTAGGATCATTTTTTCAACCATGAAGAAGTTTGATGGTTTTGAGATGCGGGATCTGACTGTACCTGAGATCAAACAGATTGCAGGGAGAGCTGGTAGATATGGATCAAATTTTCCTGTAGGAGAAGTAACATGCATGGATGCAGAAGATCTACCATTGCTCCATTCATCATTGAACTCTCCGTCACCCATTTTGGAGCGTGCTGGATTACTTCCTTCCTTTGATCTGTTGTATATGTATTCGCGATTACACTCCAAAAATGGTTTCTTTCAAATACTGGAGCATTTTATTGACAACGCCAAACTATCTGAAAAATATTTCATTGTTAATTGTGACCAATTATTGAAAGTGGCTGCTGTTATTGATGAGTTTCCCCTTGGATTGCGTGAGAAATACCTTTTCTGTATCAGTCCAGCTGACATGGATGATGAGATTTCATCTCAAGGCTTGACACAGTTTGCAGAGAATTATGCNAAGAAAGGCCTTGTCCGGCTTCGAGAAATATTTACACCAGGGACACTTAAAGTACCCAAGACACCGTCTGCTCTTAAGGACCTGGAATCCATCCACAAGGTCTTGGATCTCTACGTTTGGTTGAGTTTTAGGTTGGAAGAATCTTTCCCAGACCGCGAGCTGGCTTCATCCCAAAAGGCCATTTGCAGCATGTGNGTGTTGATTGAGGAATTCTTGGAAAGACTCGGGTGGCAGAAGCCAATGGCTAGAAGGTTGCCTTCGCGTAAAGTATCAAATTCTCTATTATCCCAACACATGAGACGATATTTATAAGTTATTCCCTCTCCATGAAACCCATGCCCGTTCTTGTATGTTCAGCATTGTACAAGTTTCACAGACAAATTCATTTTTTTATCAGGATATTTGTTATACTCNTTCAATAATGCTTCATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	282354	289101	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016817 hydrolase activity, acting on acid anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007889.1	PF00271.26	Helicase_C	281	366	3.90E-06
Glyur000094s00007889.1	PF12513.3	SUV3_C	514	563	2.20E-14
Glyur000094s00007889.2	PF00271.26	Helicase_C	281	361	1.90E-08
Glyur000094s00007889.2	PF12513.3	SUV3_C	509	558	2.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.417
SRR1783600	control	8.449
SRR1783602	moderate drought stress	12.110
SRR1811619	moderate drought stress	12.093

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.764
DRR006520	Root Summer glycyrrhizin high producing strain	11.508
DRR006521	Root Winter glycyrrhizin high producing strain	16.788
DRR006522	Root Winter glycyrrhizin high producing strain	16.352
DRR006523	Root Summer glycyrrhizin low producing strain	9.438
DRR006524	Root Summer glycyrrhizin low producing strain	9.268
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.727

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.060
SRR2868004	Drought Stress (root)	20.799
SRR2967015	Control (root)	19.208

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.446
SRR9715740	Leaf	8.186
SRR9715741	Leaf	16.217
SRR9715739	Root	5.204
SRR9715742	Root	12.227
SRR9715743	Root	10.837

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.879
SRR8749028	MeJA induced 9h	6.954
SRR8749029	MeJA induced 9h	5.790
SRR8749030	Uninduced	6.437
SRR8749031	Uninduced	2.285
SRR8749032	Uninduced	2.459

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.632
SRR8400027	Control - Root	27.802