Gene detail information of Glyur000094s00007887 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22670.1 | 4.00E-138 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_003538649.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Glycine max] |
| Swissprot | tr|Q9LUJ4|PP248_ARATH | 2.00E-173 | Pentatricopeptide repeat-containing protein At3g22670, mitochondrial (Precursor) |
| trEMBL | tr|I1LFV3|I1LFV3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G00960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00094 | 280148 | 281788 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000094s00007887.1 | PF13812.1 | PPR_3 | 162 | 190 | 0.23 |
| Glyur000094s00007887.1 | PF13041.1 | PPR_2 | 266 | 313 | 1.20E-14 |
| Glyur000094s00007887.1 | PF13041.1 | PPR_2 | 337 | 378 | 1.60E-08 |
| Glyur000094s00007887.1 | PF13041.1 | PPR_2 | 405 | 453 | 1.90E-11 |
| Glyur000094s00007887.1 | PF12854.2 | PPR_1 | 471 | 503 | 8.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.429 |
| SRR1783600 | control | 2.721 |
| SRR1783602 | moderate drought stress | 2.075 |
| SRR1811619 | moderate drought stress | 2.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.157 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.302 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.700 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.259 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.081 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.217 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.040 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.232 |
| SRR2868004 | Drought Stress (root) | 2.492 |
| SRR2967015 | Control (root) | 2.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.325 |
| SRR9715740 | Leaf | 0.308 |
| SRR9715741 | Leaf | 0.418 |
| SRR9715739 | Root | 2.525 |
| SRR9715742 | Root | 1.420 |
| SRR9715743 | Root | 1.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.923 |
| SRR8749028 | MeJA induced 9h | 3.902 |
| SRR8749029 | MeJA induced 9h | 3.267 |
| SRR8749030 | Uninduced | 1.338 |
| SRR8749031 | Uninduced | 0.560 |
| SRR8749032 | Uninduced | 0.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.721 |
| SRR8400027 | Control - Root | 1.993 |