Gene detail

Gene detail information of Glyur000094s00007876

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34670.1	3.00E-123	Ribosomal protein S3Ae
NR	AFK33413.1	0	unknown [Lotus japonicus]
COG	YP_003436886.1	3.00E-25	ribosomal protein S3Ae [Ferroglobus placidus DSM 10642]
Swissprot	tr\|Q8GTE3\|RS3A_CICAR	6.00E-178	40S ribosomal protein S3a {ECO:0000255\|HAMAP-Rule:MF_03122}
trEMBL	tr\|I3RZH1\|I3RZH1_LOTJA	0	40S ribosomal protein S3a {ECO:0000256\|HAMAP-Rule:MF_03122}

Sequence

Transcript Sequence

>Glyur000094s00007876.1
GAGTGGAGATTATTAGGGTTCCAAGTCTACTTGATACGGCCGTCAGCAAGCAGCAGGTTCAGCTTGGAGAAGNAGAGCAACAATGGCTGTCGGAAAAAATAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGGCCTCGGATCCGTTTGCTAAGAAGGATTGGTACGATATCAAGGCCCCTTCTGTGTTCCAGGTTAAGAATGTTGGGAAGACACTCGTCACCCGTACTCAGGGCACCAAGATTGCCTCTGAAGGACTCAAACATCGAGTGTTTGAGGTCTCGTTAGCTGATCTTCAAGGTGATGAGGACAATGCCTTCAGGAAGATCCGTTTGAGAGCTGAGGATGTTCAAGGGAGGAATGTTCTAACTAATTTTTGGGGTATGGATTTTACAACTGACAAGTTGAGGTCATTGGTGCGGAAATGGCAAACTTTGATTGAAGCTCATGTGGATGTGAAGACCACTGATAATTATACTNTGAGAATGTTCTGCATTGGGTTTACTAAGAGGCGTAGTAACCAGGTGAAGAGGACCTGTTATGCACAATCAAGCCAGATTAGACAGATCCGCAGGAAGATGAGAGAGATCATGACTAACCAGGCAACATCCTGTGATCTGAAAGAGTTGGTCCGTAAATTTATCCCCGAGATGATTGGAAAAGAGATTGAGAAGGCAACATCCAGCATTTACCCGCTGCAGAATGTGTTCATTCGAAAAGTCAAGATTCTGAAGGCTCCTAAGTTTGATCTTGGGAAACTGATGGAGGTTCATGGNGATTACTCAGAAGATGTGGGTACAAAGGTGGACAGACCTGCGGAAGAGACCATGGTTGAGGGAGCCACTGAAGTTGTTGGAGCTTGATCCCGTTCACAATGCATGCATTTTTGTTTGTCTTAGGATTTCTGCCTAATATTTATTTATAAGTTTTGTTTTGACTGAGAAAGTTTTTGTTTGCAATTTAAATCTGGATTTTCGTTTGGCACATTTAAACTATTGGTACAATCTGAGAACCAAGCTTAAGCAAGCATTGCAGCAACCTCATAAAGAACCGAGATTTTCTTGTNTCTTTGGCTTATTGCATATTTTCGTTTCATATGGAGACAAGAATTCGCGCAATCGGTGCAATGGTATGTATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	225174	227589	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007876.1	PF01015.13	Ribosomal_S3Ae	12	222	6.20E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	229.687
SRR1783600	control	230.819
SRR1783602	moderate drought stress	163.488
SRR1811619	moderate drought stress	163.557

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	384.581
DRR006520	Root Summer glycyrrhizin high producing strain	382.133
DRR006521	Root Winter glycyrrhizin high producing strain	170.465
DRR006522	Root Winter glycyrrhizin high producing strain	166.373
DRR006523	Root Summer glycyrrhizin low producing strain	278.380
DRR006524	Root Summer glycyrrhizin low producing strain	277.666
DRR006525	Leaf Summer glycyrrhizin high producing strain	126.570
DRR006526	Leaf Summer glycyrrhizin high producing strain	126.111

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	695.189
SRR2868004	Drought Stress (root)	379.927
SRR2967015	Control (root)	359.788

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	229.999
SRR9715740	Leaf	208.213
SRR9715741	Leaf	197.486
SRR9715739	Root	69.476
SRR9715742	Root	189.430
SRR9715743	Root	168.739

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	691.052
SRR8749028	MeJA induced 9h	278.979
SRR8749029	MeJA induced 9h	450.149
SRR8749030	Uninduced	73.227
SRR8749031	Uninduced	59.445
SRR8749032	Uninduced	70.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	395.300
SRR8400027	Control - Root	343.597