Gene detail information of Glyur000094s00007866 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14870.1 | 4.00E-18 | secE/sec61-gamma protein transport protein |
| NR | AFK44629.1 | 2.76E-54 | unknown [Lotus japonicus] |
| Swissprot | tr|O23342|SECE1_ARATH | 3.00E-35 | Preprotein translocase subunit SECE1 (Precursor) |
| trEMBL | tr|I3SWI7|I3SWI7_LOTJA | 1.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:AFK44629.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00094 | 178171 | 178650 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000094s00007866.1 | PF00584.15 | SecE | 96 | 144 | 0.0002 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.771 |
| SRR1783600 | control | 6.846 |
| SRR1783602 | moderate drought stress | 7.536 |
| SRR1811619 | moderate drought stress | 7.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.385 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.369 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.918 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.528 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.349 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.024 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.282 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.245 |
| SRR2868004 | Drought Stress (root) | 13.690 |
| SRR2967015 | Control (root) | 12.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.857 |
| SRR9715740 | Leaf | 49.270 |
| SRR9715741 | Leaf | 29.331 |
| SRR9715739 | Root | 17.437 |
| SRR9715742 | Root | 9.231 |
| SRR9715743 | Root | 10.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.763 |
| SRR8749028 | MeJA induced 9h | 8.489 |
| SRR8749029 | MeJA induced 9h | 12.088 |
| SRR8749030 | Uninduced | 5.122 |
| SRR8749031 | Uninduced | 2.858 |
| SRR8749032 | Uninduced | 8.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.760 |
| SRR8400027 | Control - Root | 13.071 |