Gene detail information of Glyur000094s00007864 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14890.1 | 6.00E-49 | 2Fe-2S ferredoxin-like superfamily protein |
| NR | XP_004511360.1 | 2.67E-82 | PREDICTED: ferredoxin-like [Cicer arietinum] |
| COG | YP_007125855.1 | 1.00E-25 | ferredoxin (2Fe-2S) [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q9ZQG8|FER3_ARATH | 2.00E-23 | Ferredoxin-3, chloroplastic (Precursor) |
| trEMBL | tr|G7K3M7|G7K3M7_MEDTR | 3.00E-79 | 2Fe-2S ferredoxin superfamily protein {ECO:0000313|EMBL:AES93680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00094 | 171188 | 171655 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000094s00007864.1 | PF00111.22 | Fer2 | 59 | 131 | 7.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.970 |
| SRR1783600 | control | 2.127 |
| SRR1783602 | moderate drought stress | 0.962 |
| SRR1811619 | moderate drought stress | 1.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.664 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.177 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.079 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.233 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.323 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.473 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.639 |
| SRR2868004 | Drought Stress (root) | 2.540 |
| SRR2967015 | Control (root) | 3.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 56.469 |
| SRR9715740 | Leaf | 66.324 |
| SRR9715741 | Leaf | 45.859 |
| SRR9715739 | Root | 2.055 |
| SRR9715742 | Root | 1.152 |
| SRR9715743 | Root | 0.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.387 |
| SRR8749028 | MeJA induced 9h | 1.439 |
| SRR8749029 | MeJA induced 9h | 2.995 |
| SRR8749030 | Uninduced | 1.455 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.821 |
| SRR8400027 | Control - Root | 8.069 |