Gene detail

Gene detail information of Glyur000094s00007863

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22450.1	2.00E-61	Ribosomal L18p/L5e family protein
NR	XP_003538642.1	1.54E-158	PREDICTED: uncharacterized protein LOC100802391 [Glycine max]
trEMBL	tr\|K7LMC8\|K7LMC8_SOYBN	6.00E-159	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G00790.2}

Sequence

Transcript Sequence

>Glyur000094s00007863.1
ATGATCATGTTGTCCATGCTCACAAGAAAAGGTGCTTCTTTATACAATCAACATATCCTCCTCTTGAGGGCATTCCATCTCGGCTTCAAGTCCCTCACCACTATTCACAATAGCGATGATGGGGCTGCAGCGAGTTCTCCACCCGTGCCACCTCCTGAACATTCTAGTAGCCTTCATGTTTCCCCATTTTTCTCCAACCCCAATCACCCCTCAAGCGGGTTTGATATCGAGCTTGTGGATCGTGATGCTTGGGGGGTCTCATCAGGGGTGGCACAAGCCTGGCGTGGACGACAGGATTTGGCTGCATCATCAGGAGCTAGTTCTTTTGATGAAGCCCTTGATGGTCATTCCTCCAATGTTGTTGAGGGTGAACTGGATTATGAGGAGGACATAGATAATATGAGAATTCGTGGCAATCTCTTCTATAAGCTTGAGCGCAGTTCCAAGGAGTTCGAAGAGTATAGTTTAGAATTCCACAGGAAGAAATCTTCTTCCAAGAGAAGAAACGACAAGCCTGAGGTAATAAACAAAGTCAAAACAACACCGAATTTGACTCCTTTCAAGGATCAGANGCTTCCCAAAGTAGGTGAATTGGCAAGAAGTAAAAAAAGTGTTGTTATGCCCCGGCTGGATGAAAATGAAATCAATGATGTGTCTCCTGTGAACANGAGGCAGAGGACTCCCACTTTCAACCAGCTTACGGGTCCTTATCATGAACCCTTTTGCTTGGACATTTACATATCAAAGGCCTCTGTTCGTGCCTGCATTGTTCATAGGGTAACTAGCAAGGTTGTTGCCGTGGCACATTCCATTTCCAAGGACATGAAGTTTGACCTGGCTTCTACCAAGAATAAAACCACTTGTGCTGCCGTTGGGGCAATCCTCGCTCAGAGAGCATTGGCTGATGATATTCATGACGTGATTTACACTCCAAGGAAAGGAGAAAGGGTGGAGGGGAAGCTGCAGATTGTTCTTCACTCTATCATTGATAATGGCATTAATATGTTCTTCTATTTCATCATGCATCAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	169551	170995	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007863.1	PF00861.17	Ribosomal_L18p	245	334	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.459
SRR1783600	control	4.756
SRR1783602	moderate drought stress	4.981
SRR1811619	moderate drought stress	4.619

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.183
DRR006520	Root Summer glycyrrhizin high producing strain	4.063
DRR006521	Root Winter glycyrrhizin high producing strain	2.439
DRR006522	Root Winter glycyrrhizin high producing strain	2.872
DRR006523	Root Summer glycyrrhizin low producing strain	4.294
DRR006524	Root Summer glycyrrhizin low producing strain	4.531
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.679
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.625

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.294
SRR2868004	Drought Stress (root)	2.773
SRR2967015	Control (root)	2.269

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.572
SRR9715740	Leaf	1.613
SRR9715741	Leaf	1.020
SRR9715739	Root	1.637
SRR9715742	Root	2.093
SRR9715743	Root	2.881

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.668
SRR8749028	MeJA induced 9h	2.447
SRR8749029	MeJA induced 9h	3.550
SRR8749030	Uninduced	0.481
SRR8749031	Uninduced	0.266
SRR8749032	Uninduced	0.580

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.655
SRR8400027	Control - Root	3.047