Gene detail

Gene detail information of Glyur000094s00007862.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14920.1	0	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
NR	XP_006590402.1	0	PREDICTED: uncharacterized protein LOC100801863 isoform X1 [Glycine max]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	3.00E-10	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|I1LFT6\|I1LFT6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G00780.1}

Sequence

Transcript Sequence

>Glyur000094s00007862.1
CTGGGCTGAGAGACGCCGCTGTTTCTGTTTGTGACTTCTGTTTTTAATTAACTTTTTTATCGATTATTTTTATTAATTATTATTGATTTAGGGGGCTGCACTGCAAAGCAAAGCAAATTCCAACCCAAAAATGAAATCTCTCTCCCTTTCTCTCTCCACTATTGATTTTCGTTCAACCTCTCTCTGACTCGTCTTTCTCCTCTCTCTCGGTTCACTTTCGGTTTCCGGCGGGGAATTGTGTCCCACTCGAGACGGAATCCGTGAATTTTCCGGCGAGGTAAGATCCTTTTGAAACCCTGCTTTGGCGTGAGGGGGAGGGGGAATACTTTGTGCCATTGGGATTGTTTCTGCTTCGGATCTGAGATTTAGGGTTTGGCATTTTTGGTGGTGTGTGTGGTATCATAATTTTTATGTGAGGGTTTTTGCTAGATGGAACCGGGCATGAGATCGGGTGGGGTTCTGGTGAAGAACAGGAACTCCTCGGGATGTTTAATTGTTCGAAAGAAAGGGGATGGGTTGGGTGCTTCGTCTACTGCCACTGCCGGTGTTGGTTCTTCCACCTCTCGGAAGTTCTATGAATCCAGGAAGAGGGCCAGCATCAAAACTCCCTTGAGTGATTCTGGATCAAGCGATGAGTTGCCATTGCCGATGCCTCCTGGTCGAAGGCTCGGACCGGAGACCATTCGAGTCTGTAATNGTTTGACTGCCCTTGAGCGGGGTATGATAGGAGGAGGGAGTGAAATTAGTAGGAAGAGGAATAGTAGAATGGAACAAATTAGGGGTAATGGGGAAGGTATGTTTGTGGAGAATGGCTTGGACATGAGGGAAAGGAAGCGTAATAAGATGGGTGCAGTTGATCTAGATGATTACGAGGGTATGGATGTGGAAAAGATGAGAAGGAAGCATTTTGAAAACGATAGAGTTGTTGGTTTAGGAGGAGGGAGGTATGTGGGATCAGTGCATACTCCTAGAGGTGGCATTGACAGGGAATTTGAAACCGGGTCAAGCAGACACATTCGTGATAAGAGAAATAACTCATATTATGACAAGATGAGCGGATTGTATCCGGGCGATGCAGCTCGGCTGCCTATACCGTTATTGAGGGAGAAGTTCAAGCCCAATGAATCTATTAGGATTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTCGGTGGGCCATTAGAACACCGTGATCATTGTAAAACCGAGGATGGCAGGCCAAGCTTGANGACTGAAGGGACTGCCAATAGGAATGTTTTGACTCATCCTTCATCGTACTTGGAAGCAAAACCTAAACCTGTTGAGAAACCAGGATTGCTTGTTAGGCCAGAGAAGAAACAGATAGTATCAAGGAAATCACTGTCAATAAAGGACGGTAAGCGCAATGAGTTGGACTCAGATAACAGTGACGGATCACTAAATCCAGGAGTAAGAAATAATGAGGCTCGCAAACCTNCAAAGAGGATAATCTCTGAGGATGAACAGACTCCTTTGTATGAAAAGCACCCAACTACAACAACGAAAGAAGGAAAAATCAAGCGTGGTAGTGGCACAGAAAAACAGAAACTGCGAGAAAGAATAAGGGAGATGCTGCTGGATGCAGGTTGGACCATAGACTATCGACCTCGGAGGAATAGAGACTATTTGGATGCAGTTTACATTAATCCAGCAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGAAGCACTTCAAAAGCAATTGAATGATGATGCTAATGAGGCCAAGCTCAAAGGGGATACCTCTTCCTTTGCTCCTATTGCAGATGATGTGCTTAGTCAGTTGACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAGAAGCAGAAAAAGAAAAGATATGATAGTGAAAGTGATAGTGGAAAAGAGCCTCACATAAGAAGCTCTGCCAGCAACAAGCATGATATGAATAGCATGGATAGTGATAGCAACGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAATAAGTCAATGAAAAATAAAATGGTAGAAAATACCACTGCTAGTGCTATCTCTAAGAGCCAGAACGCTAACCATCACACAAATGATGGAATAGAAAAATCTTTCTCTGGATGTGATCCTCATCTTCTACATGGACGGAAGAGTAGAAAACAAGGAAGATGTACCTTGTTAGTTCGCAGTTCTAAGAAGGGATTAAATTCAGAATCTGATGGCTTTGTCCCATATACGGGCAAAAGGACCGTGCTTTCCTGGTTGATTGACTCTGGGACAGTAGANTTAAGCCAAAAGGTTCAATACCGTAGACGGAAGAAAGTACTGCTGGAGGGATGGATCACAAGAGACGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCACGCCGGAAGCAAATTGCCACAGCCATATCAAAATATATTTTTGGAATCTGGAGTTTCTCTTTTACAGTGCCAGATAGATGCATGGAACAGACAAGAGAATTCTGGGAAATTTGGTTTCCATTCAGTGGATACTTATGGCGATGATCCGAATGACGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGAATAGCCGGCGGAACATCTAAAAAAGAAGTTGATGCAACTGCGCATGTCCTANGTACTTGCAACTTATATCATGCCACTTGTGCTGAGGAGATGGATGCCCTTCCAAATAACATCAATATGTCAGGCTTTTCATTTTGTGGGAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAAAAGTACNTTGGTACCAAGCACGAACTAGAAGCGGGCTTTTCATGGTCTCTTATTCGTAGAACAGATGAAGACTCAGAAGCAGCTAGTCTGGGAATTACCCAGAGGGTGGAATGCAATTCCAAGCTAGCTATTGCACTGAATGTGTTGGATGAATGCTTTTTACCTGTTGTTGATCAAAGGAGTGGGATCAATATAATCCGCAATTTTTCAGCATTTGTGAAACTGCAAATTGATAAAAAATCAAACTTCAGTCGATTGAGTTATAGTGGCTTTTACACTGCTATTTTGGAGCGAGGGGATGAAATAGTTTCTGCAGCATCTATAAGGTTCCATGGAACTAAGTTAGCAGAGATGCCATTTATTGGAACTCGCCTTATGTATAGGCGCCTAGGGATGTGCCGCCGGCTCTTTTCTGCCATTGAATCGGTCCTTTGCTCTCTGAAGGTTGAAAAACTTGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAGCCGTTTTTGGCTTCACGCATCTTGAGGAATCACTCAAGAAAGAAATGAAGTCACTGAATATGTTGGTCTTCCCTGGTTTAGATATGTTGCAGAAGCTGGTAGTGCAAGGAAAACACGAGGGCAGTGCAACTGCTGCAGGTTCAGAGAAAACGAGAAATGGAGACAATGCTTATATTAACACCAAAATGGCAAATAGGTCAGATATAGATTCATCAACTATGCAAGATCCCATTGGAAGTGATGATGCTAGTTCAAATCCTACCAATGAGATGAGCGANGAATGTAGTGATGCTTCTCAAGAAATAAACAACGAAGTTTTGGTTGGCAAGACTNTGTGTTCCAGATCTCATTCCGAGGAAGGGTTATCTGATTCTATTTCTGATAAATGTGTTTCTCCTTCTAGTACTAGTCATGGTGCACTAGAAATGAAAAGCAAAGTGATGACTCGTCTTGTTGATAAGTTAAATCCTTCCTCCAAATGTCAATCCATTTCTGACACTTCTGCGAGTAGTCACCCATTAGATGTTCCCGATTGCCATGAAGTTCAAGCTTTGGTTCATGAAGCTGCATGTTTTGATCCATGTTCAGCAGAAAACCTTGACCGGAAATGTCGCTCGTTTAGCACTATGAATTGTGATTCATNGGGGCTTGACGTTAATCCAGTGTTGGATTCTCACGTGGCAGACAATACTCTTCCATCTAAATTGGTTTGTATGAATGATACTCATGAGGTTCTTGAAGCTGTTCCTTCGGGAAATTTATCTGAAGAGAATATTACCAAGGAGAATAATCGAAATGAAGATGGATCTGATTCTGTTCTCAATCATTCTGATAAGAGTTTCTTGCAAATAAGANCTGATTCCAGCGGTGAAATTGGATGAGGGTGAGAAGAATTTACATTTGAACAGAGGAGCTGCCTCAAATGAAATTATTTCGATGAAAATGGCATAAATCAATGCTGCTATCGGTGATAGTTCCGAAACTGATCCAGTGTAACTGAGACTGACCAAGTCTTGTACTGCCGATGTGTTTCTGTGCTTTGATGCCCATGATACCCGATAGTTTCCTCTTCAGAGCTTCAACCTTGTAGGCAAAATCATTTTTCAAGGTTTTGGAGCTTCTGCTTGATCTGGATAGTATGAATAATTTCTATTGATTTCNAGGGAAATATGGTTTGGTCCCTTGTGTCTTCTTCACCAGTGTGAATTATTTTAAGGTTCGAAGTAGCTACCTTAGTATTTTTAATAAGTAAATGTTTCTTCTGCCAAAAATATTCAAGACCAAGACAAGGGTATGTAGAGTGTATTTGATTAGNCATTATAGTTATCTTATATCTTATTT

Protein Sequence

>Glyur000094s00007862.1
MEPGMRSGGVLVKNRNSSGCLIVRKKGDGLGASSTATAGVGSSTSRKFYESRKRASIKTPLSDSGSSDELPLPMPPGRRLGPETIRVCNXLTALERGMIGGGSEISRKRNSRMEQIRGNGEGMFVENGLDMRERKRNKMGAVDLDDYEGMDVEKMRRKHFENDRVVGLGGGRYVGSVHTPRGGIDREFETGSSRHIRDKRNNSYYDKMSGLYPGDAARLPIPLLREKFKPNESIRIQGKNGVLKVMVNKKKVGGPLEHRDHCKTEDGRPSLXTEGTANRNVLTHPSSYLEAKPKPVEKPGLLVRPEKKQIVSRKSLSIKDGKRNELDSDNSDGSLNPGVRNNEARKPXKRIISEDEQTPLYEKHPTTTTKEGKIKRGSGTEKQKLRERIREMLLDAGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNDDANEAKLKGDTSSFAPIADDVLSQLTRKTRKKMEKELKKQKKKRYDSESDSGKEPHIRSSASNKHDMNSMDSDSNEEKLSSFIKQGNKSMKNKMVENTTASAISKSQNANHHTNDGIEKSFSGCDPHLLHGRKSRKQGRCTLLVRSSKKGLNSESDGFVPYTGKRTVLSWLIDSGTVXLSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIFLESGVSLLQCQIDAWNRQENSGKFGFHSVDTYGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIAGGTSKKEVDATAHVLXTCNLYHATCAEEMDALPNNINMSGFSFCGKECKELFEHLKKYXGTKHELEAGFSWSLIRRTDEDSEAASLGITQRVECNSKLAIALNVLDECFLPVVDQRSGINIIRNFSAFVKLQIDKKSNFSRLSYSGFYTAILERGDEIVSAASIRFHGTKLAEMPFIGTRLMYRRLGMCRRLFSAIESVLCSLKVEKLVIPAIAELTHTWTAVFGFTHLEESLKKEMKSLNMLVFPGLDMLQKLVVQGKHEGSATAAGSEKTRNGDNAYINTKMANRSDIDSSTMQDPIGSDDASSNPTNEMSXECSDASQEINNEVLVGKTXCSRSHSEEGLSDSISDKCVSPSSTSHGALEMKSKVMTRLVDKLNPSSKCQSISDTSASSHPLDVPDCHEVQALVHEAACFDPCSAENLDRKCRSFSTMNCDSXGLDVNPVLDSHVADNTLPSKLVCMNDTHEVLEAVPSGNLSEENITKENNRNEDGSDSVLNHSDKSFLQIRXDSSGEIG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	161656	168579	+

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007862.1	PF00628.24	PHD	712	754	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.595
SRR1783600	control	15.812
SRR1783602	moderate drought stress	18.505
SRR1811619	moderate drought stress	18.436

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.731
DRR006520	Root Summer glycyrrhizin high producing strain	19.512
DRR006521	Root Winter glycyrrhizin high producing strain	19.152
DRR006522	Root Winter glycyrrhizin high producing strain	18.717
DRR006523	Root Summer glycyrrhizin low producing strain	20.516
DRR006524	Root Summer glycyrrhizin low producing strain	20.245
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.999
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.975

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.446
SRR2868004	Drought Stress (root)	31.941
SRR2967015	Control (root)	31.120

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.571
SRR9715740	Leaf	10.631
SRR9715741	Leaf	13.539
SRR9715739	Root	2.021
SRR9715742	Root	15.769
SRR9715743	Root	13.372

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.088
SRR8749028	MeJA induced 9h	26.016
SRR8749029	MeJA induced 9h	15.725
SRR8749030	Uninduced	10.877
SRR8749031	Uninduced	11.171
SRR8749032	Uninduced	11.874

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.275
SRR8400027	Control - Root	31.930