Gene detail

Gene detail information of Glyur000094s00007858

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60900.1	1.00E-110	receptor-like protein kinase 1
NR	XP_003610709.1	0	Cysteine-rich receptor-like protein kinase [Medicago truncatula]
COG	YP_003270695.1	8.00E-23	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q39202\|RLK1_ARATH	5.00E-104	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor)
trEMBL	tr\|G7K2D3\|G7K2D3_MEDTR	0	S-locus lectin kinase family protein {ECO:0000313\|EMBL:AES93667.1}

Sequence

Transcript Sequence

>Glyur000094s00007858.1
ATGTCTTTAGCAATGTTTCTGCCATGCATTACTCTGGCAGTACTAGTTTCTTGCCNGAATGGCTTACATGCCGTAGAGTTAAACTCAAGCATCACTGCTGGATCAAATTCTACTTGGAAATCTCTTTCGGGGGATTACGAATTCGGATTCTACCGTGTTCCCAATGGTCTCTTTCTTATGGGAATATGGTTTGGGAAGATCCCAGAGAGAACACNGGTATGGTACCAGAGTCCCCCTGTGGAACCAAATTCCTCAATCCAACTCACTCCTGAAGGACACCTCGTGTTAACATATCCAAATGGAAGCATTGCTCAAACTATAGACGAAGGAAAAGGAGACAGTGCCAGTTCAGCACAAATGCAAGAGGATGGCAATTTTGTTCTGAGAGACTCCAACTTAAGAACCGTTTGGGAGAGCTTCAATTCTCCAGCTAACACAATCTTACCGGGTCAAACATTGAAAAGCGAAAAAATCCTCTATTCTAAAGGGAAAGGAGCTTCAAACTACTCAATGGGGGATTTCATGTTGGAAATGCAGGGTGATGGGAACTTGGTGCTCAAAGCACACCAATGGTCAAATCCTTCCTATTGGTACACTTCAACTTTAGTCTCGGGTTTGAGTNTGGTGTTTAATGCTACCAGTGCTTTGTTGTACCTTGCAAATGCCACTGGGGACATTTATCACCCTCTAACCAACAGCAACAGCACCCCAACCCCAGTAAAGGATTACTACTACCACCGCGCTACCATAGATGAAAATGGTAATTTCCAGCAATATGTTTACCACAAAAGAAACGGCACCAAGTGGAGGAGGATTTGGAGGGCTATAGATGATCCATGCAGAGTGGAGGCTGTTTGTGCTTCTGTAATCAATTATTGTACTGGACCTTCTATGATGAACTTCAAGCTGCAGGTGTTTGATGACACTGATTTCCAGTTTTATCCGGATTTTGCTCGAATAGGTAATGTTGATTTGGAAGGGTGTAAGAAGTCTGTGATGGATGACTGTAACATCATTGCTGCAACTTTTAACTCTTCAACCTCAACATGTGCCAAGAAGAGGATGCCATTGCTGAATGCAAGAAAAAGTTCATCTTCCAAGGGACAGAAAGCACTTCTTAAAGTTCCTTACAGTGATGATGAATCCAGAAGGTCTAAAGCTTCCAAGAAGAAGAGTTTTAATGTAAGAGTTTTTTTGAAGGTCATGGTTGCAATTAGTGCCACTCTTGCATGCTTCTTTGGAGCCCTTGCTGCCTACTATCATCCTTTTGTAAAGAGGCTCACAAGAAGAACCAAGTCTCTGAATGCAACAGCTATTGGAATCAACTTCAGAGAATTCACATTCCAGGAGCTGCATGAGGCAACAGGTGGATTCAGTAGGATTCTTGGCAAGGGATCTTCAGGGAAAGTCTATCGTGGGACTTTAATAATAGATGATGCAGAGATTGGTATTGCAGTGAAGAAGCTGGAGAAGAAGATTGAGAAGAGTGAAAATGAATTCATGACTGAGCTCAAAATTATTGGCCGTACCCATCACAGGAATTTGGTGAAACTTTTGGGATTTTGCACTGAGAATAACCATAGACTTCTTGTCTATGAGTTAATGCCAAATGGAGCACTGTCCAGTTTATTGTTTGGACAGGGAGAGAGACCCCAATGGGGTCAAAGGGTTGAAATGGCTCTTGGAATTGCAAGAGGCTTGTTGTACTTGCATGAAGAGTGTGAGACCCAGATCATACATTGTGATATCAAGCCCCAAAATGTATTACTTGATGCCAATTACACGGCAAAGATTTCAGATTTTGGGCTTTCCAAGCTTCTGAACAAAGGGCAAACTAGAACAAGCACTAATTTTAGAGGGACAATAGGGTACATAGCACCTGAATGGCTAAGGAGTGCACCAATAACTGCCAAAGTTGATGTATTCAGCTTTGGGGTTATGTTGCTAGAGGTTATTTGCTGCAGGAGGCACATTGAGTCATGTCAGCCTCAGGATGAAATGGGAAGTGAAGATGACGATTTGGTTCTTGTTAATTGGGTTTTAAGGTGCATGATTACTAGGAAACTAGAGCTGGTGGTAAGTCATGACTCAGAGGTACTAAATGATTTCAAGAGGTTTGAGCAAATGGCCTTGGTTGGATTGTGGTGTGTTCATCCAAACCCAGCTCTTAGACCTTTAATGAAGCAAGTGACACAAATGCTAGAGGGAACCGTGGAAGTTGGGGTTCCACCTTTGCTTCATGATCAGNTGATGGCAGATCAGAGCTCTTATAGTTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	144837	147397	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007858.1	PF01453.19	B_lectin	71	170	5.00E-16
Glyur000094s00007858.1	PF00069.20	Pkinase	459	732	1.00E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.128
SRR1783600	control	0.129
SRR1783602	moderate drought stress	0.100
SRR1811619	moderate drought stress	0.109

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.162
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.203

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.264
SRR2868004	Drought Stress (root)	0.895
SRR2967015	Control (root)	0.299

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.940
SRR9715740	Leaf	2.641
SRR9715741	Leaf	7.976
SRR9715739	Root	0.065
SRR9715742	Root	0.369
SRR9715743	Root	0.270

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.681
SRR8749028	MeJA induced 9h	19.994
SRR8749029	MeJA induced 9h	2.884
SRR8749030	Uninduced	27.137
SRR8749031	Uninduced	8.297
SRR8749032	Uninduced	3.932

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.086
SRR8400027	Control - Root	1.520