Gene detail information of Glyur000094s00007857 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03130.1 | 5.00E-78 | photosystem I subunit D-2 |
| NR | XP_003610706.1 | 4.64E-126 | Photosystem I reaction center subunit II [Medicago truncatula] |
| Swissprot | tr|P32869|PSAD_CUCSA | 9.00E-119 | Photosystem I reaction center subunit II, chloroplastic (Precursor) |
| trEMBL | tr|G7K2D0|G7K2D0_MEDTR | 2.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:AFK47938.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00094 | 137290 | 137922 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000094s00007857.1 | PF02531.11 | PsaD | 73 | 209 | 5.50E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.610 |
| SRR1783600 | control | 0.693 |
| SRR1783602 | moderate drought stress | 0.968 |
| SRR1811619 | moderate drought stress | 1.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.427 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.998 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.065 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.491 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.585 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2369.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2433.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.355 |
| SRR9715740 | Leaf | 129.955 |
| SRR9715741 | Leaf | 1.043 |
| SRR9715739 | Root | 2.617 |
| SRR9715742 | Root | 1.160 |
| SRR9715743 | Root | 1.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.031 |
| SRR8749028 | MeJA induced 9h | 0.679 |
| SRR8749029 | MeJA induced 9h | 0.734 |
| SRR8749030 | Uninduced | 0.029 |
| SRR8749031 | Uninduced | 7.188 |
| SRR8749032 | Uninduced | 58.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.111 |